MidgeBase gene description page [Pn.03608]
Outline
| Gene ID | Pn.03608 |
| Type | Protein coding gene |
| Scaffold | PnScaf2970 |
| Start | 50692 |
| End | 52224 |
| Direction | + |
Sequence
Transcript: 786 (bp)
ATGGCTCGCGGTCCTAAGAAACATTTGAAGCGTTTAGCAGCTCCAAAGGCATGGATGTTGGACAAGCTGGGAGGTACCTTTGCTCCCCGTCCATCAACCGGTCCACACAAATTGCGTGAATCACTCCCGTTGGTTATCTTCTTGCGTAATCGCTTGAAGTACGCCTTGACAAACACCGAGACCAAGAAGATCGTCATGCAGAGACACATCAAAGTTGATGGCAAGGTCAGAACCGACATCAACTATCCAGCTGGATTCATGGATGTTGTCACCATCGAGAAAACTGGTGAATTCTTCCGCTTGATTTACGACGTCAAGGGACGTTTCACCATTCATCGCATTACTGCTGATGAAGCTAAATACAAGTTGTGCAAAGTGAAGCGCGTCACAATCGGACCGAAGAAGATCCCTTACTTGGTCACACACGACGGTCGCACTCTTCGCTACCCCGACCCGACAATTCACGTCAACGACACAATTCAATTGGATATTGCCAGCGGCAAAATCACAGATCACATTCGCTTCGAGTCCGGCAACTTGGTTATGGTCACCGGAGGTCGTAACTTGGGTCGTGTCGGAACCGTCGTGAATCGCGAGAAGCATCCGGGTTCCTTCGAAATCATTCACGTCAAGGACGCCAATGGACATGTGTTCGCCACTCGTCTGACAAACATCTTCATCATCGGAAAGGGCGCCAAGGCATACATCTCATTGCCAAAGGGCAAGGGTATTAAGCTCAGTGTTGCCGAGGAACGTGACAAGCGATTGGCACAGAAGACCACCAAC
Protein: 262 (aa)
MARGPKKHLKRLAAPKAWMLDKLGGTFAPRPSTGPHKLRESLPLVIFLRNRLKYALTNTETKKIVMQRHIKVDGKVRTDINYPAGFMDVVTIEKTGEFFRLIYDVKGRFTIHRITADEAKYKLCKVKRVTIGPKKIPYLVTHDGRTLRYPDPTIHVNDTIQLDIASGKITDHIRFESGNLVMVTGGRNLGRVGTVVNREKHPGSFEIIHVKDANGHVFATRLTNIFIIGKGAKAYISLPKGKGIKLSVAEERDKRLAQKTTN
| Type | Start | End | Length |
| CDS |
50692 |
50694 |
3 |
| CDS |
50763 |
51021 |
259 |
| CDS |
51260 |
51357 |
98 |
| CDS |
51796 |
52221 |
426 |
| intron |
50695 |
50762 |
68 |
| intron |
51022 |
51259 |
238 |
| intron |
51358 |
51795 |
438 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACY71283 |
ribosomal protein S4 [Chrysomela tremula] |
1e-130 |
| InterPro |
IPR013845 |
Ribosomal protein S4e, central |
|
| InterPro |
IPR018199 |
Ribosomal protein S4e, N-terminal, conserved site |
|
| InterPro |
IPR005824 |
KOW |
|
| InterPro |
IPR002942 |
RNA-binding S4 domain |
|
| InterPro |
IPR013843 |
Ribosomal protein S4e, N-terminal |
|
| InterPro |
IPR000876 |
Ribosomal protein S4e |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF00900.15 |
Ribosomal family S4e |
6.5e-32 |
| Pfam |
PF01479.20 |
S4 domain |
6.3e-09 |
| Pfam |
PF08071.7 |
RS4NT (NUC023) domain |
6e-21 |
| Pfam |
PF00467.24 |
KOW motif |
5.6e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV11016-PA |
| M. musculus |
ENSMUSG00000031320 |
| M. musculus |
ENSMUSG00000063171 |
| P. vanderplanki |
Pv.12612 |
| P. humanus |
PHUM601190-PA |
| H. sapiens |
ENSP00000250784 |
| A. mellifera |
GB19305-PA |
| A. gambiae |
AGAP006871 |
| D. melanogaster |
FBgn0011284 |
| T. castaneum |
TC013431 |
| B. mori |
BGIBMGA010867-TA |
| H. sapiens |
ENSP00000288666 |
| H. melpomene |
HMEL009926-PA |
| D. plexippus |
DPOGS205845PA |
| C. quinquefasciatus |
CPIJ003013 |
| S. invicta |
SI2.2.0_08231 |
| H. sapiens |
ENSP00000362744 |
| H. sapiens |
ENSP00000415317 |