MidgeBase gene description page [Pn.03568]
Outline
| Gene ID | Pn.03568 |
| Type | Protein coding gene |
| Scaffold | PnScaf2938 |
| Start | 54788 |
| End | 61549 |
| Direction | - |
Sequence
Transcript: 5355 (bp)
ATGTCAAATAGTGAGGATTATGATGATAAATTCGGAGCTGAGGACGATAGCGGCAATCTCGACGAAACCATAGGCGGTTCTGGCGATGAAGAAGCATCCAAAAATGTCAATAACGACGAAGACGACGACTACGAGCCGGAGGATAGGAAGAGAAAGAAGGGCAAAAAGCGCAAGGTTAGGAGCGAGGAAAAGTCAAAGGGTCGCAAGAAGAAGAAGCGAAGGAAGAATGAGTCGGAGGAGGAGCCCGAAGAGCAGGACCGGGGTGGCGATTCAGACGAATATTCGTCCAGTAAACGCGGCCGCAAAAAGAGAGAGAAGGAGGAGAAGAAACCTCCAACTCCTGCACCTGCTCCGAGCGAGTCAAACATGCCGACTATCGAGGAAAATCTCGTCACATACAAAATGTTCCAGCAACACGTCCGGCCGATCTTGCAGAAGGAGAACCCTCGCCAGGAGGAGGAAGAGGCTGAAAAGGAGGACGAAGAGGAGGAGGCACCGCCGCCGCCAAAGTCTCCCGAGTTCACGCCCAAGGAAACAAAGTCGCGCTCGAGCAAGAAGGCGGCAAAAGTCGCCGAAGACACTTTCGACGAGGAGTACGAGGAGGAGGAGGTGAAGTCGAGGTCGAAGAAGCGCGGACGAAGCGGCAACAGCCAGAGCAAAAAGACACGCAAGCAAAAAGTCCCAACGCTCAAGATCAAGTTCGGCAAGCGAAGGAACGCGAGCTCTGACGACGAGCAGGACGACTCGGCGGAGGGATCCGAGCGCGAGTCGGACATCGAGTTCGAGAAGATGCTCCAGCAGACAGACGAGAATGAGATGGACGAGGCACCGGCTGCTGCGAGCGGCAGCAACAACGGAGGCGGCAGTGAGGAGACAACCACCGCCGAGCCGGTCGTTCGGAAGAAGGCAAAGACCAAGATCGGCAACAAGTCGAAGAAGAAGAAGCCGAAGAAGACGAACTTTCAGGACGACGACATCGAGCACCAGGACTACTGCGAGGCCTGCCAGCAAGGCGGCGAAATCATCCTGTGCGACACCTGCCCGAAGGCCTACCATCTCGTGTGCTTGGACCCGGAGCTCGAGGAGGCGCCCGAGGGCAAATGGAGCTGCCCGACGTGCGAGGCCGAAGGACCCGGCGGAATAGAGCAGGACGACGACGAGCACCAGGAGTTTTGTCGTCTCTGCAAGGACGGCGGCGAGTTGCTGTGCTGCGATTCCTGCCCATCCGCCTACCACACCTTCTGCTTGGATCCGCCGCTCAGCGAAATCCCCGACGGCGACTGGCGGTGTCCCCGCTGCAGCTGTCCACCCTTGGACGGAAAGGCGTCGACCTCGAAGGGACCGCCGCCGCAGACGCGCACTCGCGAGTACTTCATCAAGTGGAAGGACCGGAGCTACTGGCACTGCAGCTGGATCACCGAGCTCCAGCTGGACGTCTTTCATCCGCTCATGTTCCGCTACTATACGCGCAAGTACGACATGGAGGAGCCGCCGCGTTTCGAGGAGTCGCAGCAGGACGACGAGGAGAAGAAACTTGAGGAGAAATTCTACCGCTACGGCATCAAGCCCGAATGGCTCGTCTGGCGCGAGCTGCCTTACGACCAGTCGACGTGGGAGGACGAAATGGACGAGATTCCGGGCCTGAAGGCCGCGGTTGAGTACTATCTCGATTTGCGCGCAAATTCCATGGACCCGGGCGCGGCGAAGAAGAGCAGCAGCAAGAAAAAGGGCCGACGTCGCACGAAAGAGGCTGACGACGAGGAGAAGGAGTACCAGACGAAGCGCTACAACCCGCCGCCTGACCGCCCCCTCACCGACCTGCGCAAGAAGTACGAGGTCCAGCCGGAGTACTTCAACGAGACGGGCATGCAGCTCCATCCGTATCAGATCGAGGGCATCAACTGGCTGCGCTACTCGTGGTCGCACGGCACCGACACCATCCTGGCCGACGAAATGGGTCTCGGCAAGACGATCCAGACGGCGACTTTCCTGTACTCGCTGTACAAGGAGGGCCACTGCAACGGGCCGTTCCTCATCGCCGTTCCCCTCTCGACGATCGTCAACTGGGAGCGCGAGTTTGAGCTGTGGGCGCCCGACTTTTACTGCGTCACGTATGTGGGCGACAAGGAGGCGCGCGCCGTCATCCGCGAGAACGAGCTGAGCTTCGAGGAGGGCGCCGGCGGCAAACGGACCACCAAGATCAAGAGCTCGACCATCAAGTTCAACGTGCTGCTGACGAGCTACGAGCTGATCTCGATCGACTCGGCGTGCTTGGCTTCGATCGACTGGAAGGTACTGGTCGTCGACGAGGCGCATCGTCTCAAGTCGAATCAGTCGAAGTTCTTCAAGTATCTGGCGAGCTACAACATCGAGTACAAGCTGCTGCTCACCGGCACGCCGCTCCAGAACAACCTCGAGGAGCTCTTTCACCTCCTCAACTTCCTGTGCAAGGAGAAGTTCAACGATCTGTCTGCGTTCCAGAGCGAGTTTGCGGATATCTCGAAGGAGGAGCAGGTGCAGAAGCTCCACGATATGCTCGGGCCGCACATGTTGCGTCGCTTGAAGGCGGACGTGTTGCGCAACATGCCGTCGAAGAGCGAGTTCATCGTGCGTGTGGAATTGTCGCCGTTGCAGAAGAAATATTACAAGTTCATTCTCACACGCAACTACGAGGCTCTCAATCCGAAATCCGGCGGCGGTGCATGCTCTCTCCTCAACATCATGATGGACTTGAAGAAGTGCTGCAACCATCCTTATCTATTCCCGGCGGCGTCGGAGGAGGCGCCGCTCGGACCCGGCGGAAACTATGAGATCAACGCACTCACTAAGGCGGCCGGCAAGCTCGTGCTGCTCTCGAAGATGCTGCGCATTCTGAAGCGACAAGGTCATCGCGTTTTGATCTTCTCGCAGATGACACGCATGCTCGACATCCTCGAGGACTTTTTGGAGGGCGAGGGCTACAAGTACGAGCGAATCGACGGCGGCATCACAGGAACGCTTCGTCAAGAGGCCATTGATCGTTTCAATGCTCCCGGCGCGCCACAGTTTGCTTTCCTCCTGTCGACACGCGCCGGCGGTCTCGGTATCAACTTGGCCACCGCCGACACTGTCATCATCTACGACTCTGACTGGAATCCGCACAATGACATTCAAGCGTTTTCTCGAGCGCATCGTATAGGACAAGCAAACAAGGTCATGATCTATCGCTTTGTAACCAGGAACTCGGTCGAGGAGCGCGTCACACAGGTGGCCAAGAGAAAAATGATGCTGACCCATCTCGTCGTCAGACCTGGAATGGGTGGCAAGGGAACGAACTTTACGAAACAGGAGCTCGACGACATTCTGCGTTTCGGTACCGAGGAGTTGTTCAAGGAGGACGGCAAGGAGGAGGAGGCAATTCACTACGACGACAAGGCAGTAGAGGAGCTGGTCGATCGGTCGAAGGGCGGCATCGAGGAGAAGGAGAATTGGGCAAACGAGTATCTGTCGAGTTTCAAAGTCGCGAGTTATAGCACGAAAGAGGAGGAGGAGGAAGAAACTGAGGTCATCAAGCAGGAATCCGAAAACGCAGATCCAGCCTACTGGGTGAAGCTTTTGCGCCACCACTACGAGCAGCACCAGGAGGATGTCGGTCGCAGTCTCGGCAAGGGCAAGCGCGTCCGCAAGCAGGTCAACTACACCGACGGCGGCGTCGTGGCGAACGAGTCGCGCGAGGACCAGACTTGGCAGGAGAACGTCTCTGACTACAACAATTCCGACTACAGCGGCTACTCCGACGAGGAGAACCAGGAGGACGACGAGGACAACAGCGAAAGTGGCAAGCGTGCACGCCGCCGCATGGACCGGAGAGATGACCGAGACCGGCCGCTGCCACCGCTCTTGGCGCGCGTGGGAGGAAATATCGAGGTGCTGGGCTTCAGCATCCGCCAGCGCAAGAGTTTCCTCAACAACATCATGCGCTTCGGCATGCCGCCAGAGACGACCAACGGAAGCAACTCGTGGCTGGTGAGGGACTTGCGCGGAAAGCCGGAAAAGCACTTCCGAGCGTACGTGAACCTCTTTATGCGACATTTGTGCGAGCCGGGCGCCGACAGCGCGGAGACTTTCGCAGATGGCGTTCCGCGCGAGGGCTTGAGCCGGCAACACGTGCTCACTCGAATCGGCGTGATGTCGTTGATTCGGAAGAAGGTCCTGGAGTTCGAGCACATCAATGGCTACTACTCGATGCCCGAGCTGATCAAGAAGCCGTTCGATCCGAGCACGAAGCCGCCGGACGACATAAAGGACGAAGACATGTCGAAGAGCGCAACAACCAGCACGGCTCCCTCGCCGTCGCCCTCGAACAACGAAAAGTTGGACGAGAAGGAGCGCGAGGGTGAGGAGAAGAAGCCGGAGGAGGATTCGGAAAAGTCTGAGAAATCGGAGAAGACTGAGAGCCCCGAGAGAGGAGGCGGCGGTGGCGAAAAGTCGGAGGACGCGAGTCCAAACGGCTCCGTCAAGAGCGAGGTCAAAAAAGAGGACTCGAATGGATCTGAAGAGAAGAAGCCCGACTCGAACGATGACGACGACGATGTCGTTCTCATCAGTGACGATTCGAAGCCGAAAATCAACCTCGAGGTGCATAAGCGACAGTTCATGTTCAACATCGCCGACGGCGGCTTCACCGAGCTCCACACGCTTTGGATCAACGAGGAGAAGGCAGCGTCGCCTTCGCGTGAATACGAAATTTGGCATCGGCGTCACGACTACTGGCTACTCGCCGGCATCGTCCAACACGGCTACGGTCGCTGGCAAGACATCCAGAACGACATTCGCTTCGCGATCATCAATGAGCCATTCAAAATGGACATCAACAAGGGAAATTTCCTCGAAATCAAAAATAAGTTTTTGGCGCGCAGATTCAAGCTTCTCGAGCAGGCGCTCGTCATTGAGGAGCAGTTGAGGCGCGCGGCCTATTTGAATCTGACGCAAGATCCGACGCACCCGGCGATGAGCTTGAACGCGCGCTTCGCCGAGGTCGAGTGTTTGGCCGAATCCCACCAGCATCTGAGCAAGGAGAGTCTTGCGGGCAACAAACCGGCAAACGCTGTGCTCCACAAGGTTCTCAATCAGCTCGAAGAATTGCTCTCGGACATGAAGTCGGATGTGGCGCGCTTGCCAGCAACTCTCGCCCGAATCCCGCCCGTCGCTCAACGTCTTCAGCTGAGCGAGCGACTGATTCTGTCGCGGCTGGCAGCAACAAGTTCGGCTGCTTCGGCGTCGTCAACAGCAAATCTCGTGAATTTCCCGTCTGGTTTCGCAAACACCGCGAATGCGACGGCGGCTGCTGCTGCGGCACAACATTTCAGATCTCAA
Protein: 1785 (aa)
MSNSEDYDDKFGAEDDSGNLDETIGGSGDEEASKNVNNDEDDDYEPEDRKRKKGKKRKVRSEEKSKGRKKKKRRKNESEEEPEEQDRGGDSDEYSSSKRGRKKREKEEKKPPTPAPAPSESNMPTIEENLVTYKMFQQHVRPILQKENPRQEEEEAEKEDEEEEAPPPPKSPEFTPKETKSRSSKKAAKVAEDTFDEEYEEEEVKSRSKKRGRSGNSQSKKTRKQKVPTLKIKFGKRRNASSDDEQDDSAEGSERESDIEFEKMLQQTDENEMDEAPAAASGSNNGGGSEETTTAEPVVRKKAKTKIGNKSKKKKPKKTNFQDDDIEHQDYCEACQQGGEIILCDTCPKAYHLVCLDPELEEAPEGKWSCPTCEAEGPGGIEQDDDEHQEFCRLCKDGGELLCCDSCPSAYHTFCLDPPLSEIPDGDWRCPRCSCPPLDGKASTSKGPPPQTRTREYFIKWKDRSYWHCSWITELQLDVFHPLMFRYYTRKYDMEEPPRFEESQQDDEEKKLEEKFYRYGIKPEWLVWRELPYDQSTWEDEMDEIPGLKAAVEYYLDLRANSMDPGAAKKSSSKKKGRRRTKEADDEEKEYQTKRYNPPPDRPLTDLRKKYEVQPEYFNETGMQLHPYQIEGINWLRYSWSHGTDTILADEMGLGKTIQTATFLYSLYKEGHCNGPFLIAVPLSTIVNWEREFELWAPDFYCVTYVGDKEARAVIRENELSFEEGAGGKRTTKIKSSTIKFNVLLTSYELISIDSACLASIDWKVLVVDEAHRLKSNQSKFFKYLASYNIEYKLLLTGTPLQNNLEELFHLLNFLCKEKFNDLSAFQSEFADISKEEQVQKLHDMLGPHMLRRLKADVLRNMPSKSEFIVRVELSPLQKKYYKFILTRNYEALNPKSGGGACSLLNIMMDLKKCCNHPYLFPAASEEAPLGPGGNYEINALTKAAGKLVLLSKMLRILKRQGHRVLIFSQMTRMLDILEDFLEGEGYKYERIDGGITGTLRQEAIDRFNAPGAPQFAFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGTNFTKQELDDILRFGTEELFKEDGKEEEAIHYDDKAVEELVDRSKGGIEEKENWANEYLSSFKVASYSTKEEEEEETEVIKQESENADPAYWVKLLRHHYEQHQEDVGRSLGKGKRVRKQVNYTDGGVVANESREDQTWQENVSDYNNSDYSGYSDEENQEDDEDNSESGKRARRRMDRRDDRDRPLPPLLARVGGNIEVLGFSIRQRKSFLNNIMRFGMPPETTNGSNSWLVRDLRGKPEKHFRAYVNLFMRHLCEPGADSAETFADGVPREGLSRQHVLTRIGVMSLIRKKVLEFEHINGYYSMPELIKKPFDPSTKPPDDIKDEDMSKSATTSTAPSPSPSNNEKLDEKEREGEEKKPEEDSEKSEKSEKTESPERGGGGGEKSEDASPNGSVKSEVKKEDSNGSEEKKPDSNDDDDDVVLISDDSKPKINLEVHKRQFMFNIADGGFTELHTLWINEEKAASPSREYEIWHRRHDYWLLAGIVQHGYGRWQDIQNDIRFAIINEPFKMDINKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPTHPAMSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVARLPATLARIPPVAQRLQLSERLILSRLAATSSAASASSTANLVNFPSGFANTANATAAAAAAQHFRSQ
| Type | Start | End | Length |
| CDS |
54791 |
54876 |
86 |
| CDS |
54941 |
55141 |
201 |
| CDS |
55212 |
56987 |
1776 |
| CDS |
57279 |
57386 |
108 |
| CDS |
57457 |
57496 |
40 |
| CDS |
57554 |
59116 |
1563 |
| CDS |
59177 |
59251 |
75 |
| CDS |
59315 |
59497 |
183 |
| CDS |
59561 |
60433 |
873 |
| CDS |
60509 |
60574 |
66 |
| CDS |
60635 |
60904 |
270 |
| CDS |
60963 |
61039 |
77 |
| CDS |
61513 |
61549 |
37 |
| intron |
54877 |
54940 |
64 |
| intron |
55142 |
55211 |
70 |
| intron |
56988 |
57278 |
291 |
| intron |
57387 |
57456 |
70 |
| intron |
57497 |
57553 |
57 |
| intron |
59117 |
59176 |
60 |
| intron |
59252 |
59314 |
63 |
| intron |
59498 |
59560 |
63 |
| intron |
60434 |
60508 |
75 |
| intron |
60575 |
60634 |
60 |
| intron |
60905 |
60962 |
58 |
| intron |
61040 |
61512 |
473 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003401695 |
PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein Mi-2 homolog [Bombus terrestris] |
0.0 |
| InterPro |
IPR009463 |
Domain of unknown function DUF1087 |
|
| InterPro |
IPR019786 |
Zinc finger, PHD-type, conserved site |
|
| InterPro |
IPR001965 |
Zinc finger, PHD-type |
|
| InterPro |
IPR009462 |
Domain of unknown function DUF1086 |
|
| InterPro |
IPR000953 |
Chromo domain/shadow |
|
| InterPro |
IPR012958 |
CHD, N-terminal |
|
| InterPro |
IPR000330 |
SNF2-related |
|
| InterPro |
IPR023780 |
Chromo domain |
|
| InterPro |
IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
|
| InterPro |
IPR016197 |
Chromo domain-like |
|
| InterPro |
IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
|
| InterPro |
IPR011011 |
Zinc finger, FYVE/PHD-type |
|
| InterPro |
IPR001650 |
Helicase, C-terminal |
|
| InterPro |
IPR012957 |
CHD, C-terminal 2 |
|
| InterPro |
IPR019787 |
Zinc finger, PHD-finger |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0016818 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0004386 |
helicase activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF00628.24 |
PHD-finger |
6.6e-22 |
| Pfam |
PF08074.6 |
CHDCT2 (NUC038) domain |
2.9e-95 |
| Pfam |
PF06465.8 |
Domain of Unknown Function (DUF1087) |
1e-27 |
| Pfam |
PF06461.6 |
Domain of Unknown Function (DUF1086) |
2.5e-60 |
| Pfam |
PF13831.1 |
PHD-finger |
0.00055 |
| Pfam |
PF00130.17 |
Phorbol esters/diacylglycerol binding domain (C1 domain) |
0.085 |
| Pfam |
PF13401.1 |
AAA domain |
0.002 |
| Pfam |
PF00385.19 |
Chromo (CHRromatin Organisation MOdifier) domain |
9.4e-07 |
| Pfam |
PF00176.18 |
SNF2 family N-terminal domain |
1.6e-68 |
| Pfam |
PF08073.7 |
CHDNT (NUC034) domain |
1.2e-07 |
| Pfam |
PF00271.26 |
Helicase conserved C-terminal domain |
5.1e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000440392 |
| H. sapiens |
ENSP00000369716 |
| M. musculus |
ENSMUSG00000005045 |
| M. musculus |
ENSMUSG00000063870 |
| H. sapiens |
ENSP00000440542 |
| B. mori |
BGIBMGA002931-TA |
| P. humanus |
PHUM578860-PA |
| H. sapiens |
ENSP00000350907 |
| P. vanderplanki |
Pv.03201 |
| A. aegypti |
AAEL013135 |
| H. sapiens |
ENSP00000262450 |
| H. sapiens |
ENSP00000332628 |
| N. vitripennis |
NV12262-PA |
| H. sapiens |
ENSP00000437506 |
| S. invicta |
SI2.2.0_16592 |
| H. sapiens |
ENSP00000367245 |
| D. melanogaster |
FBgn0262519 |
| H. sapiens |
ENSP00000312419 |
| H. sapiens |
ENSP00000367260 |
| D. plexippus |
DPOGS200181PA |
| H. sapiens |
ENSP00000405861 |
| S. invicta |
SI2.2.0_08419 |
| T. castaneum |
TC012115 |
| H. sapiens |
ENSP00000433676 |
| C. quinquefasciatus |
CPIJ004665 |
| P. vanderplanki |
Pv.03753 |
| A. aegypti |
AAEL013136 |
| A. gambiae |
AGAP012009 |
| H. melpomene |
HMEL009444-PA |
| H. sapiens |
ENSP00000466706 |
| A. mellifera |
GB14113-PA |
| H. sapiens |
ENSP00000349508 |
| D. melanogaster |
FBgn0023395 |