MidgeBase gene description page [Pn.03557]
Outline
| Gene ID | Pn.03557 |
| Type | Protein coding gene |
| Scaffold | PnScaf2938 |
| Start | 23996 |
| End | 25970 |
| Direction | + |
Sequence
Transcript: 1224 (bp)
ATGGCAGTGAATATAGACGAGGGAAACTGTTATGTTAATTTTAATCAGGACTTTACGTCACTTTCAGTTGGCTACAAAAACACATACACTCTGTACTTGCTGAACTCGGTCGATCAACAGCTCGAAGAGATATATTCAAGCAATGGCGATGACATTTGCCTGGTGGAACGTCTGTTTAGCAGTTCACTTCTTGCTATTGTTTCGATGAATGCACCAAGGAAATTGAAAGTTTGTCACTTTAAGAAGGGAACAGAAATATGCAATTACTCATATTCAAACACCATCAAGACGGTCAAATTGAATCGGGCTCGCCTCGTCGTCTGCTTAGAGGAAAGTCTTTACATCCACAATATTCGTGATATGAAAGTTGTTCATACAATAAGAGATACTCCAATCAATTCAAATGGCTTATGTGCGTTGGCTGCTGACTCCGACAACTGCTATCTCGCCTATCCCGGCTCGGCTGTATCGGGCGAACTGCAAATTTTCGATGCCGTCAACTTGAATGCGAAAACCATGATACCTGCTCACGATTCGCCACTTGCTGCCATGGCATTTAGTTTGAATGGATCAGAAATTGCGACTGCGAGTGAGAAAGGAACAGTCATTCGAGTCTTCTCGGTCAACGACGGAACCAAACTCTACGAATTTCGGCGCGGTGTTAAGCGCTGTGTATCAATATCTTCCTTATCATTTTCCACATGCAAGCAATATCTATGCTGTAGCAGTAACACGGAAACAGTGCACATTTTCAAGTTGGAGAAATCGAATTCAGCCGCAGCCGGTGAGCGCGGCATTGGAGGCGTTGGATCAACAAATCATTATGCGATCGGTCAAAAATCGGCGGCATCGTCCTCATCTGATGACAACTGGATGGGATACTTGAAGAGTACTGTTGCTAGCTATCTTCCTTATGCATTGCCAACTCAAGTCACAGATGTTTTTACACAAGGACGCGCTTTTGCTTCAGCAATGCTCCCTATTTCAGGCATCAAGCATGCATGCGCCATCACAACTATTGAAAAATCTCTCAGATTATTGGTTGCATCACAAAACGGATATATGTACATCTATTCTATTCCACTCGATGGTGGAGAATGTCAGTTGATTAAAAAACATGACCTTAAAAATGTAGACCAGACAGCAACGCCCCGAGAACAGCAATTAACAACAAACAGTGGCGGTGGGAATGAGCAGTCTGCTCCGATAAATATTGCCGAAAAT
Protein: 408 (aa)
MAVNIDEGNCYVNFNQDFTSLSVGYKNTYTLYLLNSVDQQLEEIYSSNGDDICLVERLFSSSLLAIVSMNAPRKLKVCHFKKGTEICNYSYSNTIKTVKLNRARLVVCLEESLYIHNIRDMKVVHTIRDTPINSNGLCALAADSDNCYLAYPGSAVSGELQIFDAVNLNAKTMIPAHDSPLAAMAFSLNGSEIATASEKGTVIRVFSVNDGTKLYEFRRGVKRCVSISSLSFSTCKQYLCCSSNTETVHIFKLEKSNSAAAGERGIGGVGSTNHYAIGQKSAASSSSDDNWMGYLKSTVASYLPYALPTQVTDVFTQGRAFASAMLPISGIKHACAITTIEKSLRLLVASQNGYMYIYSIPLDGGECQLIKKHDLKNVDQTATPREQQLTTNSGGGNEQSAPINIAEN
| Type | Start | End | Length |
| CDS |
23996 |
24051 |
56 |
| CDS |
24669 |
25646 |
978 |
| CDS |
25713 |
25798 |
86 |
| CDS |
25864 |
25967 |
104 |
| intron |
24052 |
24668 |
617 |
| intron |
25647 |
25712 |
66 |
| intron |
25799 |
25863 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657258 |
Autophagy-specific protein, putative [Aedes aegypti] gb|EAT33733.1| Autophagy-specific protein, putative [Aedes aegypti] |
1e-159 |
| InterPro |
IPR017986 |
WD40-repeat-containing domain |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR001680 |
WD40 repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF08553.5 |
VID27 cytoplasmic protein |
0.019 |
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
0.0092 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC006217 |
| A. gambiae |
AGAP007970 |
| H. sapiens |
ENSP00000288828 |
| C. quinquefasciatus |
CPIJ018766 |
| H. sapiens |
ENSP00000429654 |
| M. musculus |
ENSMUSG00000029578 |
| H. sapiens |
ENSP00000371821 |
| P. vanderplanki |
Pv.03741 |
| A. gambiae |
AGAP005910 |
| C. quinquefasciatus |
CPIJ005486 |
| D. plexippus |
DPOGS201129PA |
| H. sapiens |
ENSP00000385297 |
| P. humanus |
PHUM084890-PA |
| H. melpomene |
HMEL002443-PA |
| D. melanogaster |
FBgn0035850 |
| A. mellifera |
GB17303-PA |
| D. melanogaster |
FBgn0032935 |
| N. vitripennis |
NV13981-PA |
| H. sapiens |
ENSP00000384945 |
| A. aegypti |
AAEL013995 |
| A. aegypti |
AAEL013063 |
| P. vanderplanki |
Pv.08321 |