MidgeBase gene description page [Pn.03541]
Outline
| Gene ID | Pn.03541 |
| Type | Protein coding gene |
| Scaffold | PnScaf2928 |
| Start | 51221 |
| End | 52969 |
| Direction | + |
Sequence
Transcript: 1746 (bp)
ATGGCGAAAATTGCCCTCCACAGACGCTATCAAATGGTTCATTTGCTGACATCTGTAGATAACGAGAGAGACGGCGACTTTAACGACTTGAAAACGAGTCTTTTGGCAATGATTCACGAAAATTACTCGTGTCGATTGGACAGCAACAGGAAGGTAAACACAATTCAGCACCGCCTGACGCAGAACACCATCTTTCTCATCGACGACATTCGGAGCTTTCATGCCATCACCAGCAACTTCCATACCGACCGCTTTCGCTTCAACGGCAATTTCCTCTTCGTCCTCGTCAACGGCTACTTTGATGAGGTGCAGGAAATGTACGACACGATGTGGAAGAAGAACATCTACAATGTGTACACAGTTTATGTCGATGCCCAAGATGGCAGCATCGCTCTCAACACATTTCTGCCCTTTCAGAGCTCACAAAAGTGCGGAGACACCACACCGCAGGTCATTGTGCGGTACATGAATGGCCGATTTGACGACGAGAAAATTTTATTTCCGCAAAAGCTCCAGAACCTCCAGCGATGTCCGGTGCGCGCTGCCACATACGAGGACCCGAATGCTCTCGCTAAACGCGACTTGGGAAACGGAAGCCACGAACTGCAAGGCTATCGAGTTGATTTCATGAACATTCTGGCGCGAACGCTCAACTACACCAACGAGGTGAAGGTCGTCGCGGGGAAGATGCCGTGGGGAGTGATTTATCCGAATGGAACGGTGACGGGCACTTTTCACGAGATTCTCGTGAACAACTCGGACATTGCGTTCAGCGAGTATTACCTCAAGAGCAGCCGCAACAAGCTCTTCGATAGCAGCATTCCATTCTACTCGACGCCGATCGTGTTCGTCATTCCGCCGGGTCGTCACTTCACGCCGTTCGAGAAGCTTTTGCAGCCGTATCACTGGACCGTGTGGAGTGTGCTTGTGCTGACTATTTTAGTCGCGGTGGCGGTGATTATGCTGATAAATTTCAAGTTTCCGCAGCACAAAGCCTTCGTTTTCGGACGTAAAGTGAGACATTCCGTGACGAATTTGCTCATTGGACTTCTGGGCACGCAGCAGACAGTGCTGCCGAGGAGAAACTTCGCACGCTACATTCTCACGATGTTCCTCATTCTGTGCCTCGTGATGAGAAACATCTACCAAGGCTCGCTCTATCAGTTCCTCCAGTCGGACGGTCGACACAAGGAGGTGCAGTCGATCCAGGAAATGATCGACAAAGACTTCACTTTCTACATGTTCGAATCCTCGGTCGACCTCATCCAAACACAAGGCGAAATTCTGTCGCGAACGAGGACATTCAAAGGCGAAAACTTCATCAGAGAACGTCCGATGGATGGCGGCGAGAGAATCGCTGGCCTCGAGGCACTCACCGACGTTCACGCCGCCAACACCGACAGCGAGCGGAATTTCACGATGAAGGTGTGCAAGGAGCAGCTGATGACGCTGAGTCTCGTGCTTTACTTTCGCAAGAGCTTTTACCTCATCGACGAGATCAACAAGAAGATCAGCATCCTGATAGCTTCGGGTCTGATTGATTACTGGCTGCGACGGTCGCTCGACGATTTTAAGGACGTGCCATCGATATCGCCACGAACGTTGAATATTGATGACCTCGCTGGACCGTTTGACGTGCTGATTATCGGGCATCTTTTGTCGTTAATTGTCTTCTCGATTGAGAGGCTCATTGTTCGGCTGAAAAGGCGGAATAGGGGTCGCAAGGCCCATAAAAAATTTACGATC
Protein: 582 (aa)
MAKIALHRRYQMVHLLTSVDNERDGDFNDLKTSLLAMIHENYSCRLDSNRKVNTIQHRLTQNTIFLIDDIRSFHAITSNFHTDRFRFNGNFLFVLVNGYFDEVQEMYDTMWKKNIYNVYTVYVDAQDGSIALNTFLPFQSSQKCGDTTPQVIVRYMNGRFDDEKILFPQKLQNLQRCPVRAATYEDPNALAKRDLGNGSHELQGYRVDFMNILARTLNYTNEVKVVAGKMPWGVIYPNGTVTGTFHEILVNNSDIAFSEYYLKSSRNKLFDSSIPFYSTPIVFVIPPGRHFTPFEKLLQPYHWTVWSVLVLTILVAVAVIMLINFKFPQHKAFVFGRKVRHSVTNLLIGLLGTQQTVLPRRNFARYILTMFLILCLVMRNIYQGSLYQFLQSDGRHKEVQSIQEMIDKDFTFYMFESSVDLIQTQGEILSRTRTFKGENFIRERPMDGGERIAGLEALTDVHAANTDSERNFTMKVCKEQLMTLSLVLYFRKSFYLIDEINKKISILIASGLIDYWLRRSLDDFKDVPSISPRTLNIDDLAGPFDVLIIGHLLSLIVFSIERLIVRLKRRNRGRKAHKKFTI
| Type | Start | End | Length |
| CDS |
51221 |
52966 |
1746 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865804 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS42301.1| conserved hypothetical protein [Culex quinquefasciatus] |
4e-53 |
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
6.6e-08 |
| Pfam |
PF10613.4 |
Ligated ion channel L-glutamate- and glycine-binding site |
0.063 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
2.8e-05 |
| Pfam |
PF12555.3 |
Thiamine pyrophosphokinase C terminal |
0.73 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.05591 |