MidgeBase gene description page [Pn.03540]
Outline
| Gene ID | Pn.03540 |
| Type | Protein coding gene |
| Scaffold | PnScaf2928 |
| Start | 46413 |
| End | 48164 |
| Direction | - |
Sequence
Transcript: 1749 (bp)
ATGGTCAAGTTTAGTTTTCAAACTGTCAACATTATCACAGCTGTCGACAGCAGAACAAACGTCCAATTTCTCGGCTTTATGGCGGAAATCTTGAGGAAAAAGCAGGCGGCATTTGCTGTGAAAATCAGCAACTATCGAGGCCTCAAGGACGAGCGTCCGTTCCGGAAAAGATTTTCGGTGTTCGTACTGGATAATTACAAAAACTTTGAGCGAATAAATGAGAAAATTACACAGAATATTTTCCAATTCCGTGGAGTTTTTCTCTTTGTGTTCGTCAATGAAATTTCGGACGAGCTGCACGAAGTTTTCTCGGAATTGTGGAACAAAAGCATCAGCAATGTGCATGCACTTTACAAAGCTGCCAACAATGAGATTCATTTGGCAACAATTTTGCCATTTGAGAACCCATCGCGGTGCGCCGACACGAGACCGAAAGTCATCAATAAATTTGTGAATGGAGATTTTTTGCACGAAATAAATTTCCATCAAGATAAGTTTGCGCAAATCAACAACTGCCCCATCCGAATTACGACATTCGATGACAAAACTTCGGTGAATATTGTGAAGAAACCGGACGCAAGCATCGAGCTTTCCGGACCAAACGTCGACCTCATTGACGTGCTTTCCGAGGAGCTAAACTTCTCGATAATCTACACGGTGAAGGAAGGACCGCTGCCTTGGGGATTGATTCACAAAAACGGCACGTTGACGGGAGCTCTCAAGGACATTGACGAAAATATAGCCGATATATCACTCGGCTTTTACTACCTCCGACTCAATCGCATGCAGCTGTTCGACAAGAGCTCGATACTGTTTTCTCTGCCCCTCGTGATGGTCGTGCCGCCTGGAAGGCGATACACGTCCCTCGAGAAAATGCTTCAGCCTTTTCACGTGCTTGTGTGGCTAATTTTATTCGCAACGTTTGCCGTCGGCGTTTTGGTCATTGTGCTGATAAATTTCAAGTTCAAGCAGCTCAAGTCGACTGTCTATGGCGAAAATGTTTCCATGCCGTGCATGAACATGCTCGCTGCCGTTCTCGGTCTAAGTCAAACGAGGCTACCTTCAAGTAACTTCGCGAGGCTCCTGCTCATGATGTTCCTGATTCTGTGTTTGGTGATGAGAAACTCCTACCAAGGGTCGCTCTATAAATTTCTCCAGTCCAACGGCTACCACAAGGGAGTGCAGTCCATAGAGGAGATGCTCGCTCTCAATTTTTCCTTCTATACCTACGAGTCGGAGCTCGATATCGTCGAAAACTTTAAGTTTCTCGAGAACCGACTTCAAACATTCGATGGCGAGAATTTTCTGTTCAACAGGTCACTGAGAGTGGACGAACGGGTCGCAGTAATTGACAACTTGATTGACATTAACATCATCAATGCAAAAAACAAGCACCGGTTCAGGCACAAAGTTTTCAGGCAGCGCTTGATCACCATCAGCGTCGTGTTTTATATGCGCAAAAATTTCTTTCTGTCAACGGCCATCAACAACAAAATCGACGTGATCATCTCCAGCGGTTTGACGCAGTTTTGGGTCGAGAAGCACATAAACTTCGACAGTTTAAAATATTCGGAAGAAAACGACCAACCAAAGGTGATTGAAATCGGTGAAATCGTTGGAGCATTTACCATTTTGATGTTTGGACATTTTGCTGCGTTTCTCGTGTTTTTGGTGGAAATTTTGGCCATTAAATTGAGGTTTATGCGACGACACCAGCGCTATCGTCACCAGTTTAGCAATGAAAAGTTG
Protein: 583 (aa)
MVKFSFQTVNIITAVDSRTNVQFLGFMAEILRKKQAAFAVKISNYRGLKDERPFRKRFSVFVLDNYKNFERINEKITQNIFQFRGVFLFVFVNEISDELHEVFSELWNKSISNVHALYKAANNEIHLATILPFENPSRCADTRPKVINKFVNGDFLHEINFHQDKFAQINNCPIRITTFDDKTSVNIVKKPDASIELSGPNVDLIDVLSEELNFSIIYTVKEGPLPWGLIHKNGTLTGALKDIDENIADISLGFYYLRLNRMQLFDKSSILFSLPLVMVVPPGRRYTSLEKMLQPFHVLVWLILFATFAVGVLVIVLINFKFKQLKSTVYGENVSMPCMNMLAAVLGLSQTRLPSSNFARLLLMMFLILCLVMRNSYQGSLYKFLQSNGYHKGVQSIEEMLALNFSFYTYESELDIVENFKFLENRLQTFDGENFLFNRSLRVDERVAVIDNLIDINIINAKNKHRFRHKVFRQRLITISVVFYMRKNFFLSTAINNKIDVIISSGLTQFWVEKHINFDSLKYSEENDQPKVIEIGEIVGAFTILMFGHFAAFLVFLVEILAIKLRFMRRHQRYRHQFSNEKL
| Type | Start | End | Length |
| CDS |
46416 |
48164 |
1749 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865804 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS42301.1| conserved hypothetical protein [Culex quinquefasciatus] |
3e-53 |
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
2.1e-07 |
| Pfam |
PF06506.6 |
Propionate catabolism activator |
0.049 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV31176-PA |
| N. vitripennis |
NV26075-PA |
| N. vitripennis |
NV22927-PA |
| N. vitripennis |
NV20879-PA |
| S. invicta |
SI2.2.0_00767 |
| N. vitripennis |
NV21474-PA |
| N. vitripennis |
NV22255-PA |
| A. mellifera |
GB17575-PA |
| N. vitripennis |
NV22268-PA |