MidgeBase gene description page [Pn.03533]
Outline
| Gene ID | Pn.03533 |
| Type | Protein coding gene |
| Scaffold | PnScaf2928 |
| Start | 29097 |
| End | 31397 |
| Direction | - |
Sequence
Transcript: 1908 (bp)
ATGCGATTTTTAATTTTCGTTCACATGCTGCTGCTGCTTCGATGCTGCGGGTGTAGAGAGCTCTTTTCAATCACCGCAGAGCACGCCAGTCAAAGAAGCTTATTTTCGGCGGCAATTGCGATACTGTCATCGGATCGGGTTGCATCGAAAGCAACCACGCTGAACTTTGTCGTTTCATTAAGCGACGGGAGCAATCACGGGAGCAGCGAGCTGATAAATGAGTTGATCGAGCGAGCGAGCAGAAATCGCATCGTGGTCGTGGAGCATGCGAACTTCATTCGTCAACGTCATCGCTTCTTCAGCGTGCTCATCGTGGACGACTCGAAATCCTTTAATCGCATTTACAGTAAAATTTCATCCGATACGTTCGTGATTGATGGCTTCTATCTCGTAATTTTCGTCGGCGACGGCGTGAACACGACGGAAATCGAGAGCATTGCGAGACTCTTGTGGGAGCGCTTCATCTACAACGTCAACTTTCTCCTGCTTGGCGACGGCTCCGAAGTGAATCTGATGACATTCGTGCCGTTCTCGAAATGCGAGAGCGACACTTGTCGACACGAGGAGCATTGTGGTAATGTGAAACCAATAATAATTAATCAGTACGTCAACGGAGCGTTCCGGTCGAGCGAGCAGCACTCTTTCGCCGAGAAGATATCTAATTTATATCGCTGTCCATTGAAAGTCGTAACGTTCAATTGTCCGCCCATGATGATGATAAACTACGAGAATATTCCACCGAACAGCAGCGCCTTTCGCCTCACTGGCGTTGACGGTGAGATGATGACAACTCTTGCCAGCGAGCTGAACTTTGAAATCGATCTCGTCCACATCTCCGACTTGATAAGATGGGGCTCATTGAGCTCGAATGGAACGAGTACGGGCGCAATGCGAATGGTCATTAATAACGAAGTTGATCTTACAGTCGGAATGTACACGATAACGCATCTTCGCTCAAAGGTCATGACGAGTTCTGAGTTCTACTACTCGGTGCCGTTTGCCCTCATTGTCCCGCCCGGAACTTCGTTGAGCTCGTTCGAAAAGCTCTTCAGGCCATTTGACCTGAGCGTGTGGACCGTGCTGTCGCTGACATTTCTCGTCGCCTTTATCGCTGTCATTGCGATAAAGCTTCGAGGTGACGGCACGCGGGACTTTGTGTTTGGTCGGGCAAATAGGTCGCCGCTTTTAAACGTGTTAATTGGCTTCGTCGGCGGCTCACAGACAATCGTGCCGCGACGCAATTTCGCACGAACGCTTCTCATCATGTACTTGCTGTTCTGCCTCGTGAAGCGGTCGCTCTATCAAGGAGCGCTCTTTCAGTTCCTGCAAACGGACGAGCGCCACAGTCCAATCGGGTCGATTGACGAGCTCGTCGAGCGCGACTTTAAAGTCTTCATGCTGCCCTCGTCGCTGGAGCACACGCAGCACATGAAGTTTAAAGAGAAGAGACGAGCAGTGAATGCAACAGTTTTATTGGAAAAGCGAATGGAAACATTGAAGCCGTCGTCACATCACGCCGTATCGAGTTCGCTCGAGCAAGTTCTCTACTACAATAAATTGAATTACAAAAACAACACGCTCACAGTGTGCCGAGAATATCTGTTTACATTTCAATACGGCATCTATTTTAGGAAGAACTCTTATCTCGCTCGGGTCTTCAACGAGCGGATCTCATTGTTCAAGGCGAGTGGCCTCATCGATTTCTGGTCATCGGATTTCATTAGCAATCAATATCTCAACATGAGAATCGCCAGCGACGGCCCGAAGATGCTCAACGTTGAGCATTTGCTGGGCTGCTTCGAGATACTGTGTGCGGGCTGTCTAATTGCCTCTCTCGCGTTCATCGCCGAAGTGATGACGGTGCGCTGGCACATTAAGGGCATGATGAGATTTTTTGAGTTCTTTCTG
Protein: 636 (aa)
MRFLIFVHMLLLLRCCGCRELFSITAEHASQRSLFSAAIAILSSDRVASKATTLNFVVSLSDGSNHGSSELINELIERASRNRIVVVEHANFIRQRHRFFSVLIVDDSKSFNRIYSKISSDTFVIDGFYLVIFVGDGVNTTEIESIARLLWERFIYNVNFLLLGDGSEVNLMTFVPFSKCESDTCRHEEHCGNVKPIIINQYVNGAFRSSEQHSFAEKISNLYRCPLKVVTFNCPPMMMINYENIPPNSSAFRLTGVDGEMMTTLASELNFEIDLVHISDLIRWGSLSSNGTSTGAMRMVINNEVDLTVGMYTITHLRSKVMTSSEFYYSVPFALIVPPGTSLSSFEKLFRPFDLSVWTVLSLTFLVAFIAVIAIKLRGDGTRDFVFGRANRSPLLNVLIGFVGGSQTIVPRRNFARTLLIMYLLFCLVKRSLYQGALFQFLQTDERHSPIGSIDELVERDFKVFMLPSSLEHTQHMKFKEKRRAVNATVLLEKRMETLKPSSHHAVSSSLEQVLYYNKLNYKNNTLTVCREYLFTFQYGIYFRKNSYLARVFNERISLFKASGLIDFWSSDFISNQYLNMRIASDGPKMLNVEHLLGCFEILCAGCLIASLAFIAEVMTVRWHIKGMMRFFEFFL
| Type | Start | End | Length |
| CDS |
29100 |
29562 |
463 |
| CDS |
29847 |
30443 |
597 |
| CDS |
30550 |
31397 |
848 |
| intron |
29563 |
29846 |
284 |
| intron |
30444 |
30549 |
106 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001656708 |
hypothetical protein AaeL_AAEL003328 [Aedes aegypti] gb|EAT45390.1| conserved hypothetical protein [Aedes aegypti] |
1e-68 |
| InterPro |
IPR001638 |
Extracellular solute-binding protein, family 3 |
|
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0030288 |
outer membrane-bounded periplasmic space |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Gene Ontology(MF) |
GO:0005215 |
transporter activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
5.4e-16 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
8.7e-08 |
| Pfam |
PF14401.1 |
RimK-like ATPgrasp N-terminal domain |
0.011 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.13276 |
| B. mori |
BGIBMGA007088-TA |
| P. vanderplanki |
Pv.05598 |