MidgeBase gene description page [Pn.03513]
Outline
| Gene ID | Pn.03513 |
| Type | Protein coding gene |
| Scaffold | PnScaf2917 |
| Start | 15395 |
| End | 16170 |
| Direction | + |
Sequence
Transcript: 447 (bp)
ATGGAGGTGATTCTAAACGATACAGTGTCACCAAAAGAACTTGAAAAATTCGAGAAAAATTACATGAGGGAACTTAGTGAATGCAACACAGCATCGGCAAAGACGACTTTTGAATTTGCAAATTGCCTCGTAAGATCGAAATACGGTGCAGACATCCACAATGGAATCAAACTTTTCGAAAATCTTTGCAAAGACGATCCAGAAAACAAAAGAGACTATATTTACTACATTATTGTGGGCTACACACGGATAAAGGATTTCACAAACGCCAAAAAATACATAAAGGCCTTTCTAGATATCGAACCGGATAATTTGCAAGTGTCAATGCTTGATGATTACATTGATAAGGAGATTAAAAATGAAATGGTGAAGGATGCAACAATGGCAGGTGGTGCATTGCTAGCAATTGGTGGAATTGTGGGATTGGCCTTTGCCTTGGCAAAGAAA
Protein: 149 (aa)
MEVILNDTVSPKELEKFEKNYMRELSECNTASAKTTFEFANCLVRSKYGADIHNGIKLFENLCKDDPENKRDYIYYIIVGYTRIKDFTNAKKYIKAFLDIEPDNLQVSMLDDYIDKEIKNEMVKDATMAGGALLAIGGIVGLAFALAKK
| Type | Start | End | Length |
| CDS |
15395 |
15439 |
45 |
| CDS |
15555 |
15784 |
230 |
| CDS |
15918 |
15975 |
58 |
| CDS |
16054 |
16167 |
114 |
| intron |
15440 |
15554 |
115 |
| intron |
15785 |
15917 |
133 |
| intron |
15976 |
16053 |
78 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001659404 |
hypothetical protein AaeL_AAEL008671 [Aedes aegypti] gb|EAT39534.1| conserved hypothetical protein [Aedes aegypti] |
4e-42 |
| InterPro |
IPR016543 |
Tetratricopeptide repeat 11 Fission 1 protein |
|
| InterPro |
IPR011990 |
Tetratricopeptide-like helical |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF12895.2 |
Anaphase-promoting complex, cyclosome, subunit 3 |
0.012 |
| Pfam |
PF13428.1 |
Tetratricopeptide repeat |
0.14 |
| Pfam |
PF00929.19 |
Exonuclease |
0.065 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000223136 |
| P. vanderplanki |
Pv.16819 |
| P. humanus |
PHUM465980-PA |
| S. invicta |
SI2.2.0_04338 |
| B. mori |
BGIBMGA003785-TA |
| T. castaneum |
TC014659 |
| H. melpomene |
HMEL003954-PA |
| A. aegypti |
AAEL008671 |
| M. musculus |
ENSMUSG00000019054 |
| A. mellifera |
GB19243-PA |
| C. quinquefasciatus |
CPIJ802038 |
| D. melanogaster |
FBgn0039969 |
| A. gambiae |
AGAP009852 |
| N. vitripennis |
NV10480-PA |
| D. plexippus |
DPOGS210935PA |