MidgeBase gene description page [Pn.03512]
Outline
| Gene ID | Pn.03512 |
| Type | Protein coding gene |
| Scaffold | PnScaf2917 |
| Start | 10482 |
| End | 14127 |
| Direction | - |
Sequence
Transcript: 3156 (bp)
ATGGCTACATTACGAATGGAGGAGGCGTCGAGGCTGCTCGATTTCTCGCAAAAACTTGACATTTCCCTGCTGGAGAACATCGTCGGATGCCTGTACAACAGTCAAGGTGAACAACTGCGATTAGCGCAAGAGATATTGACGACACTTAAGGAGCACCCCGACGCATGGACGCGCGTTGACACAATCTTGGAGTTTAGCGAAAACCAACAAACGAAATACTACGCCCTGCAGATCCTCGAGGAAGTCATCAAGACGCGCTGGAAAGTGCTGCCGCGAAATCAGTGCGAGGGCATAAAAAAGTACGTCGTCGGTCTAATTATCAAAACGTCGTCCGATGCGAAAGTGATGGAGTCAAACAAAGTCTATTTGAATAAGTTGAACATTATTTTGGTGCAGATACTGAAGCGTGAATGGCCGAAGAATTGGGAGTCCTTCATAAGCGACATCGTGGGCGCGTCGAAGACAAACGAGACGCTCTGCCAAAACAACATGATAATTTTGAAGCTGCTGAGCGAGGAGGTGTTTGACTTCTCCAGCGGACAAATAACGCAAACGAAGGCGAAGCATCTGAAAGACACCATGTGCTCCGAGTTCTCGCAAGTGTTTCAGCTGTGCTCGTTTGTGCTGGAAAATTCGCTAAATGCGCCGCTGATTAGTGCCACCTTGGAGACTCTGCTGAAGTTCCTCAACTGGATTCCGCTTGGCTACATCTTCGAGACGAAGCTCATAAACATGCTCGTCGAGAAGTTCCTCGTTATTCCCATGTTCCGCAACGTCACGCTCAAGTGTCTGTCGGAGATTGCGGGTCTTCAGCTGCCGAACTACGACCACATCTTCGTGCAGCTCTTTGTGCAGACGATGGAGCAGTTCGTTCAAATGATTCCCGCCGACACAAACATGAATCAAATCTACGCCAACGGCAACGACGAGGAGCAGTGCTTCGTGCAGAACTTGGCGATGTTCCTGTGCACGTTCTTGCGCGTTCACGCGACGCTAGTCGAGAAGCGTGAAACGGCCGATGCCGTCAACAAGGCGCTCGTGTATTTGGTGATGATCAGCGAGGTCGAGGACGTGGAGCTGTTCAAGATCTGTCTCGAGTACTGGAACAGTCTCGCCGCCGACCTGTACAAGGAGAATCCCTACGGCCAGGGCTCGCGTCGTCAATTCTACTCGAGCATTCTGTCGAAGGTGCGCAACATCATGATTTCTCGCATGGCCAAGCCGGAAGAGGTGCTCGTCGTCGAAAATGAAAACGGCGAGGTGGTCCGCGAGTTCATGAAGGACACCAACAGCATCAACCTGTACAAGAACATGAGAGAAACCCTCGTCTATTTAACGCATTTGGATTACTTTGACACCGAACGAATCATGACTGAGAAACTCAACAAGCAGGTGAACGGATCGGAGTTTTCGTGGAAGAACTTGAACACGCTGTGCTGGGCGATCGGATCGATTTCGGGTGCTTTCTATGAGGAAGACGAGAAACGCTTCTTGGTCGCCGTCATCAAGGATCTGCTAGGTTTATGCGAGCAAAAGAAGGGCAAAGACAACAAGGCTATCATCGCGAGCAACATCATGTATGTCGTGGGCCAGTACCCGCGCTTCTTGCGCGCCCACTGGAAGTTTCTGAAGACGGTCGTCAATAAGCTCTTCGAGTTTATGCACGAGACGCACGACGGCGTTCAGGACATGGCCTGCGACACTTTCATCAAGATCGCGATAAAATGCAAACGGCACTTTGTGACAATGCAACCCAACGAGGGCTGCACGTTCGTGGAAGAAATCCTCACCAATACAAGTACAATAATTTGTGATCTTCAGCCGCAGCAAGTCCACACGTTCTACGAGGCTGTCGGCTACATGATCAGCGCTCAAATGGACCAAGTGCAGCAAGACGCGCTCATCAAGAAGTACATGAGCCTGCCTAATGAGGTCTGGGATCGCATCATCAATCACGCGGCAGAGAACGCCGACATCCTCAAGGACATGGCAGCTGTGAAGCAAATCGGTAGCATTTTGAAAACGAACGTGCGCGCCTGCAAAGCCCTCGGACACAACTACGTAATTCAGTTGGGCTGTATTTACCTCGACATGCTCAACGTCTACAAGCTCATGTCGGAGAACATTTCACAGGCCATCTCGGTGAATGGCATCGCCATCAACAACCAGCCGCTCATCAAAGCAATGCATGTCGTGAAAAAGGAGACGCTGACGCTCATCAGCGAGTGGATTGTGCGATCAAACGACTCGCAGATGGTGATGGAGAGCTTCATTCCGCCACTCCTCGACGCGGTCCTTCTCGACTATCAACGAACAATGGTTCCATCCGCACGCGAACCGACCGTCTTGAGCACGATGGCCGCTATCGTGAATAAGCTGGAAGGAGTCATTACGAGCGAGGTTCCGAAGATCTTCAATGCCGTCTTCGAGTGCACGCTCGACATGATAAACAAGAACTTTGAGGACTACCCGCAACACCGTACCTACTTCTACGAGTTGCTGCAGGCCGTGAACTTGCACTGCTTCAAGGCATTCTTAATTATTCCGCCACCGCAGTTCAAGTTGGTCTTTGATTCAATCGTCTGGGCATTTAAGCATACGATGAGAAACGTCGCTGACACGGGATTGGCAATCTTATTCCAACTTTTGCAAAATCTCGAGCAACACCCGCAAGCGGCGCAGAGCTTTTATCAAACCTACTTCACAGACATCTTGATGCAAATCTTCAGTGTCGTAACAGACACCTCGCACACGGCATCGCTTCAGTCTCATGCTCAAATTCTCGCCCACATGTTCTCGCTCGTCGAGGCAAATGCTATAACAATACCGCTCGGACCAATTCCAAACAATGTTTTGTACATTCAAGAATACGTTGCATCACTCCTTAAGTCAGCATTTGGACATTTGACCGATAATCAAATCAAAGTTTTTGTTACTGGACTCTTCAATCTTGATCACGACGTTGCCCAATTCAAGGAACATTTGCGAGATTTCATCATTCAGATTCGGGAGGTGACTGGCGACGATGATTCCGACCTCTACTTGGAGGAGCGAGAGCAGGAGCTGAAGAAGGCTCAAGACGAGAAGCGTCGTCATCAGCTAACAGTGCCCGGCATGCTTAATCCTCACGAACTGCCTGAGGACATGCAGGACGAA
Protein: 1052 (aa)
MATLRMEEASRLLDFSQKLDISLLENIVGCLYNSQGEQLRLAQEILTTLKEHPDAWTRVDTILEFSENQQTKYYALQILEEVIKTRWKVLPRNQCEGIKKYVVGLIIKTSSDAKVMESNKVYLNKLNIILVQILKREWPKNWESFISDIVGASKTNETLCQNNMIILKLLSEEVFDFSSGQITQTKAKHLKDTMCSEFSQVFQLCSFVLENSLNAPLISATLETLLKFLNWIPLGYIFETKLINMLVEKFLVIPMFRNVTLKCLSEIAGLQLPNYDHIFVQLFVQTMEQFVQMIPADTNMNQIYANGNDEEQCFVQNLAMFLCTFLRVHATLVEKRETADAVNKALVYLVMISEVEDVELFKICLEYWNSLAADLYKENPYGQGSRRQFYSSILSKVRNIMISRMAKPEEVLVVENENGEVVREFMKDTNSINLYKNMRETLVYLTHLDYFDTERIMTEKLNKQVNGSEFSWKNLNTLCWAIGSISGAFYEEDEKRFLVAVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAIKCKRHFVTMQPNEGCTFVEEILTNTSTIICDLQPQQVHTFYEAVGYMISAQMDQVQQDALIKKYMSLPNEVWDRIINHAAENADILKDMAAVKQIGSILKTNVRACKALGHNYVIQLGCIYLDMLNVYKLMSENISQAISVNGIAINNQPLIKAMHVVKKETLTLISEWIVRSNDSQMVMESFIPPLLDAVLLDYQRTMVPSAREPTVLSTMAAIVNKLEGVITSEVPKIFNAVFECTLDMINKNFEDYPQHRTYFYELLQAVNLHCFKAFLIIPPPQFKLVFDSIVWAFKHTMRNVADTGLAILFQLLQNLEQHPQAAQSFYQTYFTDILMQIFSVVTDTSHTASLQSHAQILAHMFSLVEANAITIPLGPIPNNVLYIQEYVASLLKSAFGHLTDNQIKVFVTGLFNLDHDVAQFKEHLRDFIIQIREVTGDDDSDLYLEEREQELKKAQDEKRRHQLTVPGMLNPHELPEDMQDE
| Type | Start | End | Length |
| CDS |
10485 |
10631 |
147 |
| CDS |
10787 |
11152 |
366 |
| CDS |
11249 |
11581 |
333 |
| CDS |
11655 |
12032 |
378 |
| CDS |
12101 |
12640 |
540 |
| CDS |
12736 |
14127 |
1392 |
| intron |
10632 |
10786 |
155 |
| intron |
11153 |
11248 |
96 |
| intron |
11582 |
11654 |
73 |
| intron |
12033 |
12100 |
68 |
| intron |
12641 |
12735 |
95 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
CAE55861 |
Exportin 1 [Chironomus tentans] |
0.0 |
| InterPro |
IPR001494 |
Importin-beta, N-terminal |
|
| InterPro |
IPR014877 |
CRM1 C-terminal domain |
|
| InterPro |
IPR011989 |
Armadillo-like helical |
|
| InterPro |
IPR013598 |
Exportin-1/Importin-beta-like |
|
| InterPro |
IPR016024 |
Armadillo-type fold |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(MF) |
GO:0008565 |
protein transporter activity |
|
| Gene Ontology(MF) |
GO:0005488 |
binding |
|
| Pfam |
PF08389.7 |
Exportin 1-like protein |
1.8e-40 |
| Pfam |
PF03810.14 |
Importin-beta N-terminal domain |
1.2e-10 |
| Pfam |
PF08767.6 |
CRM1 C terminal |
2.5e-124 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM345850-PA |
| D. melanogaster |
FBgn0020497 |
| N. vitripennis |
NV11333-PA |
| M. musculus |
ENSMUSG00000020290 |
| B. mori |
BGIBMGA010657-TA |
| C. quinquefasciatus |
CPIJ009366 |
| A. mellifera |
GB15620-PA |
| H. sapiens |
ENSP00000384863 |
| A. gambiae |
AGAP009929 |
| A. aegypti |
AAEL001484 |
| T. castaneum |
TC012162 |
| H. sapiens |
ENSP00000385942 |
| S. invicta |
SI2.2.0_15995 |
| H. melpomene |
HMEL004304-PA |
| D. plexippus |
DPOGS208474PA |
| H. sapiens |
ENSP00000385559 |
| P. vanderplanki |
Pv.16820 |