MidgeBase gene description page [Pn.03498]
Outline
| Gene ID | Pn.03498 |
| Type | Protein coding gene |
| Scaffold | PnScaf2910 |
| Start | 20911 |
| End | 26453 |
| Direction | - |
Sequence
Transcript: 1299 (bp)
ATGCCTGTCTATAATTTAAATGCTCGTAGACGACAAAATAAGTCAAAAGATTTCATTGATGAGATTCTTAATTTGGACTCGGGGTCATTAGATGAGGCACTGAAACTCGAGAAATTTCTAGCCGACGATAGTATTCTTATAAAGCAAGAACCCGAAGAGCTCTCAATGGCCGAAGTACGAGACAGACAGAAGAAGGATAATCATAATATGATCGAGCGCCGACGACGGTTTAACATAAACGACCGGATAAAGGAGCTCGGCACGCTCCTCCCGAAAACCAATGAATTTCTCTTCGACATCATCCAAGACCTGCACATCCGACAGCCGAACAAGGGCACCATCCTGAAGTCCTCCGTCGACTACATCAAGTGTCTCAAGCACGAGGTGAACCGGCTGAAGCGCAACGAGCAGAAGCAGAAGGACTTGGACGGCGTGAACAGACGTCTGATAACGAGAATTCGGCTCGTTCGCTCGAGTGCCGAGTTGGAGGCGCTGGCACGAAAGCACGGCCTGCCAATCAAGGAATTTGATCTCAACGACGTGGAATCATCTCAAGTGCTCTGCGAGGAGGCGACCGAGGCGGAAGACGAGGAGGACTCGATGGAAGACGAAATCAACCGAAATCAGCTGAATCCAATTGAGCACCACGAGCATTCGACAACCCTAGAAATAATCGACGCGGACGACGCGAAGAAAGTCATCAATCTGACCGAGCTCGAGAGCCTCATCGAGTGCGACACCGACCTGAAGCTCAACGATCCGCTGCTGTCGTCGTTTCAGCTCTTCGACACGCCGCCCTCGTCCTCGCACTCCAACTCCATTCCGTCGTCGCCGTCGTCGATATCGACGGTGTCGAGCAACGGCAAGCGGAGGAAAACGACGTCGGTGTCGTCGGCGAGCAAGCACACGTTCAAGCCCTTCCACAGCAGCGACGACGACGACGACGAGGACTTCGATGCGGGCAGCGTGAAGGCGTCGTCGCGACACAAGAACAAGCGCAACAAGTACTTCGACGGCAGCACCGACGCGACCAGCGCGAATGTGAACGAGAGCAGCAGCGGCGGCGGCGGCATCAACGAGCGCTCGAGCGCCTTGAGCCTCAAAGACCCCATGATGATGTCGGCCTCGCATTCTCCGGCGCATTTTTCGAGCGACCTCAGCAGCTACATGGATCAAATGTTTTTCTCATCGTCACAGTATCTCTCGCCGAGCTTGGCCGCCGACGATACCATCGACCTCTGCACCATCCTGAAGACGGAAAACTCGCTCGGCTACGACAGCGACATGATCATGATCGGA
Protein: 433 (aa)
MPVYNLNARRRQNKSKDFIDEILNLDSGSLDEALKLEKFLADDSILIKQEPEELSMAEVRDRQKKDNHNMIERRRRFNINDRIKELGTLLPKTNEFLFDIIQDLHIRQPNKGTILKSSVDYIKCLKHEVNRLKRNEQKQKDLDGVNRRLITRIRLVRSSAELEALARKHGLPIKEFDLNDVESSQVLCEEATEAEDEEDSMEDEINRNQLNPIEHHEHSTTLEIIDADDAKKVINLTELESLIECDTDLKLNDPLLSSFQLFDTPPSSSHSNSIPSSPSSISTVSSNGKRRKTTSVSSASKHTFKPFHSSDDDDDEDFDAGSVKASSRHKNKRNKYFDGSTDATSANVNESSSGGGGINERSSALSLKDPMMMSASHSPAHFSSDLSSYMDQMFFSSSQYLSPSLAADDTIDLCTILKTENSLGYDSDMIMIG
| Type | Start | End | Length |
| CDS |
20914 |
21570 |
657 |
| CDS |
21660 |
21821 |
162 |
| CDS |
21914 |
21931 |
18 |
| CDS |
21986 |
22236 |
251 |
| CDS |
26032 |
26200 |
169 |
| CDS |
26412 |
26453 |
42 |
| intron |
21571 |
21659 |
89 |
| intron |
21822 |
21913 |
92 |
| intron |
21932 |
21985 |
54 |
| intron |
22237 |
26031 |
3795 |
| intron |
26201 |
26411 |
211 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002011460 |
GI14117 [Drosophila mojavensis] gb|EDW10950.1| GI14117 [Drosophila mojavensis] |
3e-44 |
| InterPro |
IPR024097 |
Basic helix-loop-helix leucine zipper transcription factor |
|
| InterPro |
IPR024103 |
Basic helix-loop-helix leucine zipper transcription factor, arthropoda/nematoda, putative |
|
| InterPro |
IPR011598 |
Helix-loop-helix DNA-binding |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Pfam |
PF00010.21 |
Helix-loop-helix DNA-binding domain |
3.4e-14 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.17241 |
| S. invicta |
SI2.2.0_08022 |
| N. vitripennis |
NV13937-PA |