MidgeBase gene description page [Pn.03436]
Outline
| Gene ID | Pn.03436 |
| Type | Protein coding gene |
| Scaffold | PnScaf2837 |
| Start | 84242 |
| End | 88735 |
| Direction | + |
Sequence
Transcript: 3642 (bp)
ATGCGACTTCGGCTGCTGAAATTTCTCCTGCTTATCAATCTTTGCGTAACACCACAAGCGTCCGCCACAGAAACAAAAATCAGCGTCCGCGTCAGAGACTACTCGCTGCTGTCGCAAGCACTGCACAAGATCGTGTCCCAAGTGGTCGTCGAACTCGCCGTGACACTCAACCTCATCTCGATTGACGGCAATCACGAGAGCAACGACTTCCGCGACAGTTTCATGCGGGAAGTGACGCAAAGTCCGCAGATTTTGCTCCGTCAGCAGCAGATCGAGGGTCTGCACTCGTTGGGCGTGCGAGGACCTCGTCGGACCTGCATCATGCCGCTGCGCTCCTACAAGGACTTCCTCCAGCTCGCCTCGCAAATCAACGACGAAAATTTCCTCACTCGCGGCGTCTACGTTTTCGTGCTTCTAAACGGCGCCTTCGCGGAGACCGAGCGAATGTTTGCGCGTCTCTGGCAAATGCAGATCTACAACGTGAACGTGCTCTACGAGAAAAGCGACGGCAGTCTCGCGGTCGCTACATATTTTCCCTTCAGCTCGAGTGGCCACTGCTCGAACGCGACCTCAGTCGTAATCAACGAGTTCCGAGACGGTAATTTCGCTCACGACCTGCGCGACTTTTTCCCAAACAAAATGCGAAACCTCAAGCGATGCGAGGTGCGAGTCGCGACTTCGAGCACGTCGGTTCCCTACATTTTCCTCAAAAAACAGCCGAGCGGCGAGAAACGGCTGCAGGGACGCGACTACGACCTGATCACGACGCTCGCAAGCGTCCTCAATTTTCGCATCAATTTCACGTACATCGGACCCGAGGGCTTTCTCTTCCCCAACGGCACTGCCGGCGGCTCCTTTCGCTACCTCATGGACGGCAACGCGGACGTGGCTCTCGCCGACTACTGGCTCAAGTCGTCACGGACGATGTTCTTCGACGCGTCCACCGCCTACATCAACGAGAAGGTCGTCTTTGTGATCCCGAAGGGCTCGGACCTCTCCTCGTTCGAGAAGCTTCTCTACCCGCTGCAGCTCACCACCTGGCTCATGCTCATCGTCTGCTTCCTCGTCGGCTTCTCCGTCATCTTCGTCGTTCTCCGCTCGCACTCGAAAACAGCTCGAAATTTCGTGTTCGGCACTCGAGTGCGCTATCCGTACTTCAACATGTGGACGGCTCTCGTCGGCACTCTGCAGCATCGAGTGCCGGGCCGGAATTTTGCGCGCTTTATTCTCACGCTCTTCGTGCTGTTCTGCATGATCATGCGGACCGCTTACCAGGGCAAAATGTATCAGGTGATGCAATCGAACCGGCGGCACTCCGAGCCGCAAACGTTCGATGAAATTGTTGAGCGCGAGTACGATATTACGGTACTCAATAACTACGTCGATTTGGTGGCCGAGAGGACCGGCATGCGGACTGTCGTGAAACCTTTGACACTGGAGCTGTCGCAATGGGTGAACCAGTTGGACAGCGAGCGCCATGCAATTCTGCTGCCATACACACAAGTCTACTACAAACTGCTTGGGAACAGCACGCTTAAGTTGGTCATTTGCCGCGAAGTGTTTCTCACCATTCCGACCGTCATTTACACGACCCGAAACTTCTACCTCCTCGACGCCATCAACGAGCAAATCGAGGCCTTTAGCGCCGCCGGCTTGATCGACTACTGGCACTTGATGGCGTTCGACAAGAAGCTCATGGAGTCGGTTGAATCGAGGCAGCCGAAGGTGCTCACACTGACGCACCTGTCGGGAATATTTCAAGTGTGGACAGCCGGTTGCTGCGTCAGCTTCCTTGCGTTCCTCATCGAGTGTGCACGCGCACGACGGCGCATTAAATCAAATGATTTTGTCGTCAACCAGGCCGACAGTTGCGAAAGACGAACGACAGTAGTTGAAATGTCGCGTGTGTTAGCAGTCGTCGTGTGTTTGCTGTTGTGCCTGCCGAATTCGAAAACTTTCGACATTTCACCGCACGTCAATGTTGTCTTATGCAAATGGTTCGCGACCTTCCCGGAGAAAGACAATAAAAAAGTGATTTATGCGATTTTCGGAGACGCGAGCGAAGACGTCGAGTTTCTGCGGCAATTAGAGACTCCGATTGTCGTCGAGACAATCGCCAACTTGAGCGACATCGGACGCAGGAGGGACTTTAATGTGATATTCATCAGCGACGACGCGCAGCTGAGGAAGTTTCATGCAAAATACTCGTCCACGCTTTTCAATAGCCACGGCTTCTATGTCGTCGTGGCCAATCGAGTCGACATTTTCGAGTGGTTTTGGGAGAAGCAAATTTTGAATGTGAATGTCGTGAGCGAGGTCGTTGAGGGAAGTGTGGCGGTCTTCTCCTATTTTCCGTTCAACAGCCACGAGTGCGGCAACACGCAGCCCACGCTCGTCAACACCACGGAGCCCTTCTTTCCCGACAAACTCTCGAATCTTTTCGGCTGCGAAGTCCGGCTCGCAACGTCGAAAATTTCCCAGCCTTACGTCTTCGTCGAGAGCGCCAGCGACGGCTCAATAATGCGACTTTATGGCCGAGACATGGATCTTATCGCTGCGCTATCGCAGGCCATAAAATTCCACGCACAATACGTCTATGTCGGAGTCGAGGGTGCACTCTGGAGCGACGGCAGAGCGGAGGGGCCGTTCGAGCTGCTCCTCGCCAACAAGACCGATCTAATTATCGCCGATTATTGGCTGATGCCATCGCGCTTGAGATTCATCGACAGCACGCTGCCCTACTCGTCGTCGCACATCGCATTCATCGTTCCTCCGGGCGCTCCGTATTCCTCGTTTCGCAAACTTCTCCTTCCCTTCGACGTGCATACATGGCTCACCCTAATCTCGATTTCTGCAATTAGCCTCGTCGTCATATTCGGGGCGAGGCGTCGCATGAGCAAACGACAGCAAAGTTGGATTTTTGGCATCTCTTCGAGTGACCCATATATGAATCTAATTAGAGCAATTCTCGGCGGATCTCAGAAGATTGTCCCGAAAAGCAGCTCGGGTCGTGTTCTGCTGACGGCGATGCTTGTGGTGTGTCTCGTATTGAGGACGGTCTACTTGGGATCGCTCTACAGATTTCTGCAGAAGAGCATCAAGCACAAGGAGGTTCAATCGGTTGACGAGATGGTCGAGCGAGATTTCAGCGTCTACTACTTGACGTCGGTGAAGGATCTGATGGAGAACACGTCGTCACGACTGAGGGACAGACTCATCGGTGTAACGATTGCGCAGCGCACAAACATCATTTCGCAAGTCTATAATCCATCTTTTAAAGGTGCATTTTTAAGATCTCTCACCGGAATTCAGTATATAAATCAACACAATCACCATAAAGGCGAACTGTTTACAGTTTGCAAGGAGAACTTCATGACGATCCCCGTTGTGATTTACACTCGAAAGGACTTCTATCTCGTCGACAAAATCGATGAGAAAATTCAGCAAATACAGGCAGCGGGATTGATAGATTACTGGCACTCGCAGTGGATCGATCGAAAGTATTCGACGGCGACAGACAGCGGCAAGCCCATGAAACTGAGCATGAGTCATTTGCTGAGTTGCTTCACCGTTTGGATGTTTGGCTTGATAATCGCCTTCATTATCTTTATGGCTGAGAATTGCAAATTCCGTCTGATGAGA
Protein: 1214 (aa)
MRLRLLKFLLLINLCVTPQASATETKISVRVRDYSLLSQALHKIVSQVVVELAVTLNLISIDGNHESNDFRDSFMREVTQSPQILLRQQQIEGLHSLGVRGPRRTCIMPLRSYKDFLQLASQINDENFLTRGVYVFVLLNGAFAETERMFARLWQMQIYNVNVLYEKSDGSLAVATYFPFSSSGHCSNATSVVINEFRDGNFAHDLRDFFPNKMRNLKRCEVRVATSSTSVPYIFLKKQPSGEKRLQGRDYDLITTLASVLNFRINFTYIGPEGFLFPNGTAGGSFRYLMDGNADVALADYWLKSSRTMFFDASTAYINEKVVFVIPKGSDLSSFEKLLYPLQLTTWLMLIVCFLVGFSVIFVVLRSHSKTARNFVFGTRVRYPYFNMWTALVGTLQHRVPGRNFARFILTLFVLFCMIMRTAYQGKMYQVMQSNRRHSEPQTFDEIVEREYDITVLNNYVDLVAERTGMRTVVKPLTLELSQWVNQLDSERHAILLPYTQVYYKLLGNSTLKLVICREVFLTIPTVIYTTRNFYLLDAINEQIEAFSAAGLIDYWHLMAFDKKLMESVESRQPKVLTLTHLSGIFQVWTAGCCVSFLAFLIECARARRRIKSNDFVVNQADSCERRTTVVEMSRVLAVVVCLLLCLPNSKTFDISPHVNVVLCKWFATFPEKDNKKVIYAIFGDASEDVEFLRQLETPIVVETIANLSDIGRRRDFNVIFISDDAQLRKFHAKYSSTLFNSHGFYVVVANRVDIFEWFWEKQILNVNVVSEVVEGSVAVFSYFPFNSHECGNTQPTLVNTTEPFFPDKLSNLFGCEVRLATSKISQPYVFVESASDGSIMRLYGRDMDLIAALSQAIKFHAQYVYVGVEGALWSDGRAEGPFELLLANKTDLIIADYWLMPSRLRFIDSTLPYSSSHIAFIVPPGAPYSSFRKLLLPFDVHTWLTLISISAISLVVIFGARRRMSKRQQSWIFGISSSDPYMNLIRAILGGSQKIVPKSSSGRVLLTAMLVVCLVLRTVYLGSLYRFLQKSIKHKEVQSVDEMVERDFSVYYLTSVKDLMENTSSRLRDRLIGVTIAQRTNIISQVYNPSFKGAFLRSLTGIQYINQHNHHKGELFTVCKENFMTIPVVIYTRKDFYLVDKIDEKIQQIQAAGLIDYWHSQWIDRKYSTATDSGKPMKLSMSHLLSCFTVWMFGLIIAFIIFMAENCKFRLMR
| Type | Start | End | Length |
| CDS |
84242 |
85659 |
1418 |
| CDS |
85842 |
86252 |
411 |
| CDS |
86344 |
87726 |
1383 |
| CDS |
87838 |
87905 |
68 |
| CDS |
88371 |
88732 |
362 |
| intron |
85660 |
85841 |
182 |
| intron |
86253 |
86343 |
91 |
| intron |
87727 |
87837 |
111 |
| intron |
87906 |
88370 |
465 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002071686 |
GK25012 [Drosophila willistoni] gb|EDW82672.1| GK25012 [Drosophila willistoni] |
3e-49 |
| InterPro |
IPR001638 |
Extracellular solute-binding protein, family 3 |
|
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0030288 |
outer membrane-bounded periplasmic space |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Gene Ontology(MF) |
GO:0005215 |
transporter activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
6.1e-27 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
6.3e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.11060 |
| P. vanderplanki |
Pv.04731 |