MidgeBase gene description page [Pn.03410]
Outline
| Gene ID | Pn.03410 |
| Type | Protein coding gene |
| Scaffold | PnScaf2816 |
| Start | 32934 |
| End | 43663 |
| Direction | + |
Sequence
Transcript: 840 (bp)
ATGGATCCGTCAGTAACAGACAATCACGTACAGCAATATGGCGAAGTCAATCAACTAGGAGGAGTTTTTGTAAATGGTCGACCACTGCCAAATGGCACACGAATGAGAATCGTTGAATTAGCGAGATTAGGCATCCGCCCGTGTGACATCTCCAGGCAGTTGCGGGTCTCGCACGGCTGTGTGTCGAAGATATTAGCGCGCTATCATGAGACAGGATCGATTCTTCCGGGCGCGATCGGCGGCTCAAAACCGAGGGTGACCACACCGAAAGTCGTCAACTACATTCGCGAGCTTAAGATGAAGGATCCAGGAATTTTCGCGTGGGAAATCCGAGACCGACTCCTGGCGGACGGCGTTTGCGACAAGAACAACGTTCCAAGCGTTAGCTCAATATCTAGAATTCTAAGAAACAAAGTGACAAACCACCATCACCACAACTCGGCAATCTCGCACGCGCACACCCATCCTCACTTGTACAACTCCATCTATCCGACATACCCGTACGCAACGCCGCCTTCGATCAAGAGCGAAAACTCGCCCAACACGTCGTCGTCGTGCGGCAGCCCCTCGCCACCGAACAACATCATGCGAAACTGCCATCACTGGCCGCCACTGACGCACTCTGCCGCGCACATTACGCACTCGGTGAACGACATCTTGAGCTTCAATCAGAAGTTCGTGCAGCCACAGACGTCACCGCAATTGGCCGCCTCGTCGCCCATGATGAACACGCACGACGCTCAAAACTCGCATTCGCAGAACTACAACTATTACATGTACTTTCAAAACACCGCCATGCACGGAGGCGGCGGCAATGGAATTTCGACCGGTGCAAACTTA
Protein: 280 (aa)
MDPSVTDNHVQQYGEVNQLGGVFVNGRPLPNGTRMRIVELARLGIRPCDISRQLRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVNYIRELKMKDPGIFAWEIRDRLLADGVCDKNNVPSVSSISRILRNKVTNHHHHNSAISHAHTHPHLYNSIYPTYPYATPPSIKSENSPNTSSSCGSPSPPNNIMRNCHHWPPLTHSAAHITHSVNDILSFNQKFVQPQTSPQLAASSPMMNTHDAQNSHSQNYNYYMYFQNTAMHGGGGNGISTGANL
| Type | Start | End | Length |
| CDS |
32934 |
32946 |
13 |
| CDS |
42480 |
42541 |
62 |
| CDS |
42634 |
42772 |
139 |
| CDS |
42842 |
42937 |
96 |
| CDS |
43131 |
43660 |
530 |
| intron |
32947 |
42479 |
9533 |
| intron |
42542 |
42633 |
92 |
| intron |
42773 |
42841 |
69 |
| intron |
42938 |
43130 |
193 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001689344 |
AGAP001493-PA [Anopheles gambiae str. PEST] gb|EGK96529.1| AGAP001493-PA [Anopheles gambiae str. PEST] |
2e-77 |
| InterPro |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
|
| InterPro |
IPR001523 |
Paired domain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF13565.1 |
Homeodomain-like domain |
0.0097 |
| Pfam |
PF00292.13 |
'Paired box' domain |
2.9e-69 |
| Pfam |
PF13384.1 |
Homeodomain-like domain |
1.1e-05 |
| Pfam |
PF13551.1 |
Winged helix-turn helix |
0.0052 |
| Pfam |
PF12802.2 |
MarR family |
0.058 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_09237 |
| M. musculus |
ENSMUSG00000001497 |
| H. sapiens |
ENSP00000355245 |
| N. vitripennis |
NV11293-PA |
| H. sapiens |
ENSP00000381499 |
| B. mori |
BGIBMGA000787-TA |
| D. plexippus |
DPOGS212842PA |
| H. sapiens |
ENSP00000410355 |
| D. melanogaster |
FBgn0003129 |
| T. castaneum |
TC008838 |
| A. gambiae |
AGAP001493 |
| H. melpomene |
HMEL004481-PA |
| P. humanus |
PHUM515110-PA |
| M. musculus |
ENSMUSG00000037034 |
| H. sapiens |
ENSP00000384817 |
| P. vanderplanki |
Pv.05690 |