MidgeBase gene description page [Pn.03393]
Outline
| Gene ID | Pn.03393 |
| Type | Protein coding gene |
| Scaffold | PnScaf2790 |
| Start | 83175 |
| End | 86576 |
| Direction | + |
Sequence
Transcript: 2349 (bp)
ATGAATAATTATGCAAACGAAAATGGCACGGGTCTAGAGCAGCAGGTCGCTGGTCTGGACTTGAATGAACGTAAAGGTTCATCTCAACGCTATATTCCACCTCACTTGAGGGATAGTGATTCTTCTTCTAAGTTTAACGATAATAATCAAGGAGAGAACGTCAGGGAGTTCAACAATCGTGGAGGACCTGAAAGAGATTTCAATAATCGAAACAATAATCGTCGATACAACAGCAACAATAATTACAATCAACGAGATAACTATCAGCAACGAGGTGGTGGCGCAGGAGGAGAATTCAACAACTTCAATAATCACTCGAATTACAACAATAATCGTTATCAAAACGGAGATTCAGGTGATTCTCGTGGTCCTGGTGGTGGAAATTGGAACAATAATCGTAATAGTAACGGTCCGCGATCGTTCAACAATCGCTCGCAAGGAGGTTTCGGCGGCGGCAATCCAAACTTTCAGCAACCGCCGCCGCCGCCTCAGCAGGCAGCGCAGGGACCGCAGGCACCGCAGGGACCACCTCCGCCCCAAGGACCGCCCCAACAGCAGAATTATCGCGATGAACCAGTCAACACGCGCTGGCAAGAGCCTCCCCCTCAACAGAGACCACCGCAACAAGACGACCGCTTCGGCCGGCCGAACAACAATGGCGGCAATTTTGGTGGAAAGTGGAATCAACGCGGCGGCGATGTTGATTATACTGTACCGCTACCACGTGATGAACGTGTTGAACAGGAGCTGTTCGGTACTGCGAACACCGGTATCAATTTTAGCAAATACGAAGACATTCCCGTGGAGGCGACGGGTCAGCAGGTCCCTGAACACATCACTTCATTTGATGACATCAAGTTGACGGAAATCATTCGTAGTAATATTAAATTGGCTAGATACGACAAACCGACTCCGGTGCAAAAGTATGCCATACCGATTATTCTTTCGGGACGCGATCTCATGTCGTGCGCACAAACTGGATCTGGCAAAACCGCCGCGTTTCTCGTTCCGATTTTGAATCGCATGCTTGAACAAGGAGCGAGTATGAATCCTCCTTCGAATCGTCCCTATCAACGGCGCAAGCAGTATCCGCTTGGACTGGTATTGGCACCAACACGCGAGTTGGCTACACAGATTTATGAGGAAGCCAAAAAGTTTTCCTATCGCTCGCGCATGCGTCCAGCTGTCCTCTATGGAGGCAACAATACAAGCGAGCAAATGCGTGAGCTTGATCGAGGATGTCATTTGATCGTCGCGACTCCGGGTCGCTTGGACGACATCATCAACCGTGGAAAGATTGGATTGGAGAATTTGCGCTACCTAGTGCTTGATGAAGCCGATCGTATGCTTGATATGGGTTTCGAACCGCAGATTCGCCACATCATTGAGAATCGCGACATGCCGCCTACAGGTCATCGCCAAACACTGATGTTCTCGGCCACTTTTCCCAAGAACATCCAGGAGTTGGCGAGCGACTTTTTGTCGAACTACATCTTTTTGGCTGTCGGACGCGTTGGATCGACATCCGAGAACATTACCCAGACAATTTTGTGGGTGAACGAGCACGAGAAGCGCTCGTATTTGCTTGATTTGTTGAGTCGCTTGCGCGAGGGATCGCCCGACTATTCGCCCGACAGCTTGACTTTGATCTTTGTCGAGACGAAGAAGGGTGCCGACGCCCTTGAGGAGTTCTTGTATCAGAACAAGCATCCGGTCACGTCGATTCACGGCGACCGAAGTCAACGTGAGCGTGAAGAGGCACTCAAATGCTTCCGCTCTGGCGATTGTCCCATTCTCGTTGCGACCGCTGTCGCTGCTCGCGGTTTGGACATTCCGCACGTTAAGCACGTCATTAACTACGACTTGCCGTCGGACGTCGAGGAGTATGTGCATAGAATCGGTCGTACAGGCCGCATGGGAAATCTCGGTATTGCGACAAGCTTCTTCAACGAAAAGAACCGCAACATTGTGTCTGACTTGGTCGAGTTGTTGATCGAGACCAATCAGGAGTTGCCGGGCTTCTTGGAGGAGATGGCGAACGATCGCTATGGCGGTCCTCGACGTAGCAACAACAACAGAGGAAACAATCGCTACGGAGGTAGCGGCTTTGGATCGCGCGATTATCGTCAGCAGAGTAATAACCGTTATGGCGGTGGCGGAAATAGCGGTGGTGGTGGTGGCGGCGGCGGCGGCGGTGGAGGTGGAAATCGCGGCTACGGAAATCGCAATTACGGAAACAATGACGGCTATCGAGGTGGTGGCGGTGGCGGCGGAAGTGGATATGGAGGAAGTTATAACAACAACTTCAACAACAATCACGCAAGCTCTGGTTCCGACTGGTGGGATGAT
Protein: 783 (aa)
MNNYANENGTGLEQQVAGLDLNERKGSSQRYIPPHLRDSDSSSKFNDNNQGENVREFNNRGGPERDFNNRNNNRRYNSNNNYNQRDNYQQRGGGAGGEFNNFNNHSNYNNNRYQNGDSGDSRGPGGGNWNNNRNSNGPRSFNNRSQGGFGGGNPNFQQPPPPPQQAAQGPQAPQGPPPPQGPPQQQNYRDEPVNTRWQEPPPQQRPPQQDDRFGRPNNNGGNFGGKWNQRGGDVDYTVPLPRDERVEQELFGTANTGINFSKYEDIPVEATGQQVPEHITSFDDIKLTEIIRSNIKLARYDKPTPVQKYAIPIILSGRDLMSCAQTGSGKTAAFLVPILNRMLEQGASMNPPSNRPYQRRKQYPLGLVLAPTRELATQIYEEAKKFSYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLDDIINRGKIGLENLRYLVLDEADRMLDMGFEPQIRHIIENRDMPPTGHRQTLMFSATFPKNIQELASDFLSNYIFLAVGRVGSTSENITQTILWVNEHEKRSYLLDLLSRLREGSPDYSPDSLTLIFVETKKGADALEEFLYQNKHPVTSIHGDRSQREREEALKCFRSGDCPILVATAVAARGLDIPHVKHVINYDLPSDVEEYVHRIGRTGRMGNLGIATSFFNEKNRNIVSDLVELLIETNQELPGFLEEMANDRYGGPRRSNNNRGNNRYGGSGFGSRDYRQQSNNRYGGGGNSGGGGGGGGGGGGGNRGYGNRNYGNNDGYRGGGGGGGSGYGGSYNNNFNNNHASSGSDWWDD
| Type | Start | End | Length |
| CDS |
83175 |
83219 |
45 |
| CDS |
83516 |
83679 |
164 |
| CDS |
83965 |
84562 |
598 |
| CDS |
84659 |
84837 |
179 |
| CDS |
84973 |
85099 |
127 |
| CDS |
85172 |
85393 |
222 |
| CDS |
85497 |
86394 |
898 |
| CDS |
86458 |
86573 |
116 |
| intron |
83220 |
83515 |
296 |
| intron |
83680 |
83964 |
285 |
| intron |
84563 |
84658 |
96 |
| intron |
84838 |
84972 |
135 |
| intron |
85100 |
85171 |
72 |
| intron |
85394 |
85496 |
103 |
| intron |
86395 |
86457 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAZ41384 |
Ded1-like DEAD-box RNA helicase [Chironomus tentans] |
0.0 |
| InterPro |
IPR014014 |
RNA helicase, DEAD-box type, Q motif |
|
| InterPro |
IPR011545 |
DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
|
| InterPro |
IPR000629 |
RNA helicase, ATP-dependent, DEAD-box, conserved site |
|
| InterPro |
IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
|
| InterPro |
IPR001650 |
Helicase, C-terminal |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004386 |
helicase activity |
|
| Gene Ontology(MF) |
GO:0008026 |
ATP-dependent helicase activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF06862.7 |
Protein of unknown function (DUF1253) |
0.11 |
| Pfam |
PF00270.24 |
DEAD/DEAH box helicase |
4.8e-52 |
| Pfam |
PF04652.11 |
Vta1 like |
7.9 |
| Pfam |
PF00271.26 |
Helicase conserved C-terminal domain |
3.4e-28 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
0.0043 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000069045 |
| A. aegypti |
AAEL004453 |
| P. humanus |
PHUM168090-PA |
| A. aegypti |
AAEL004472 |
| H. sapiens |
ENSP00000353284 |
| A. mellifera |
GB19873-PA |
| N. vitripennis |
NV13478-PA |
| S. invicta |
SI2.2.0_13785 |
| H. sapiens |
ENSP00000400377 |
| M. musculus |
ENSMUSG00000000787 |
| P. vanderplanki |
Pv.04478 |
| H. sapiens |
ENSP00000443710 |
| D. melanogaster |
FBgn0263231 |
| H. melpomene |
HMEL004307-PA |
| H. sapiens |
ENSP00000398953 |
| H. sapiens |
ENSP00000392494 |
| A. gambiae |
AGAP003047 |
| T. castaneum |
TC013328 |
| M. musculus |
ENSMUSG00000039224 |
| D. plexippus |
DPOGS203070PA |
| H. sapiens |
ENSP00000336725 |
| H. sapiens |
ENSP00000382840 |
| C. quinquefasciatus |
CPIJ014361 |
| B. mori |
BGIBMGA007594-TA |