MidgeBase gene description page [Pn.03392]
Outline
| Gene ID | Pn.03392 |
| Type | Protein coding gene |
| Scaffold | PnScaf2790 |
| Start | 78684 |
| End | 80591 |
| Direction | + |
Sequence
Transcript: 1722 (bp)
ATGCTAATTTCAGCCAAGAGCTATCTCAGAGAGTATGACTTTATTGTCGTCGGGAGCGGGTCTGGAGGATGCGTTTTGGCCAACAGACTTTCAGAAAATAAAAATTGGAATGTGCTCCTGATCGAAGCCGGCCATGTTGAGACTCTCATTCAAGACGTCCCCTTATTTGCAACAATAAACCAACATACCTCATACGATTGGCAGTTCAAAGCTGAACCGCAAACAAGTGCATGCTTAGGCATGAACAACAACGAATGCAACTTTCCTCGTGGCAAAGGAGTTGGAGGCTCCTCCATAATTAATTACATGATATACAACAGAGGACACAGCAACGATTTCGATCGATGGGAGCAAATGGGGAACGACGGATGGTCGTTTAATAAAATCGAAAAATATTTTAAGAGAGCAGAAACGATGACGCTCGGCGACTTGAAAAAGAGTTTGTTCAACAAACAGGTGAACGTTGCTTACAATCCATTCAAGACGAAGTTGGCTCACACATTTGTTGACGCACACAAAGAACTCGGATACGACATGATTCACTACAACATTCAATCGCGGCCTGGAGTTTCCTATTTGCAAGCGAGCACACTAAATGGATATAGACACACGGCATTTCGTGCCTTCATCAAAGACGTTTTACATCGCCCAAATCTTCACATTATGCTCGGAACACATGCCACCAAAATTTTGATTGATCCGAAAACGAAAGTTGCACATGCCGTCGAATTTGTGAGAAAAGGCCGAAAGCACGTGATCGGCGCTAGAAAAGAAATAATCTTATCGTCAGGGACATTCAATTCGCCGCAGTTGCTCATGCTGTCGGGAGTGGGACCTAAAAAGGATTTAAGTGAATTAGGCATACCTGTCATTCACGATTTGCCTGTTGGCAAAACAATGCGTGACCACTACATTTATTTCGGCTTGACAGTAGTCATGAATTCCACTGGCAACTCAATCTCGCTGCAAAAGGCGCTTAGTCCGTCATCGTTTGCCTCATTTGCAGAGGGACAGGGTCAAATTTCACTGCCTGGCGGCGGCGAGGCTTTGAGCTTCATACAGACGAGTGTGAACTCGAGAGGCTCCAACGTGCCAGACGTGGAGTTCTTCGAGTTGAGCGGTTCTTTAGCAACTGATCGCGGTATCTTGGCAAGAAATTATAATTTCAAGCGCGAAATCTTCGACAAGGTTTATCGGCCACTGGTCAACTCACCTCTCGATGCAATGACACTTGCGATAATTACCTTTCATCCAAAGTCTGTAGGTAACATTAAGTTGCGAGACAAAAATCCTTTTAGCCACCCGAAAATTTATTCAAACATGCTGACACACGAAGACGACGTGCAAACAATCTTGGAAGGCATAAAGTTTGCAATCTCATTACTGAAAACTGAACCGTTTAGGAAACTCGGCGCGCGGCTTCACTCGATCCCTCTGCCGATGTGTGCTCACTTGCATTTTGGCAGCGACGACTACTGGCGGTGCACAATACGAAGCTTGACATCGACAGTGCATCACCAAACGACCACCTGCAAGCTCGGCAACTCGTCTTTCGACAAGTTCGCTGTCGTAAATAACGAATTAAAAGTTTACGGAATTCATCGCTTAAGAGTCGTTGACACGAGCATTATCCCCGAACCCACGAGTGGCCACACCAACGCAGTTAGTTTTATGATTGGAGAAAAAGCAGCCGATTTGATAAAAGACACATGGATGACCGGC
Protein: 574 (aa)
MLISAKSYLREYDFIVVGSGSGGCVLANRLSENKNWNVLLIEAGHVETLIQDVPLFATINQHTSYDWQFKAEPQTSACLGMNNNECNFPRGKGVGGSSIINYMIYNRGHSNDFDRWEQMGNDGWSFNKIEKYFKRAETMTLGDLKKSLFNKQVNVAYNPFKTKLAHTFVDAHKELGYDMIHYNIQSRPGVSYLQASTLNGYRHTAFRAFIKDVLHRPNLHIMLGTHATKILIDPKTKVAHAVEFVRKGRKHVIGARKEIILSSGTFNSPQLLMLSGVGPKKDLSELGIPVIHDLPVGKTMRDHYIYFGLTVVMNSTGNSISLQKALSPSSFASFAEGQGQISLPGGGEALSFIQTSVNSRGSNVPDVEFFELSGSLATDRGILARNYNFKREIFDKVYRPLVNSPLDAMTLAIITFHPKSVGNIKLRDKNPFSHPKIYSNMLTHEDDVQTILEGIKFAISLLKTEPFRKLGARLHSIPLPMCAHLHFGSDDYWRCTIRSLTSTVHHQTTTCKLGNSSFDKFAVVNNELKVYGIHRLRVVDTSIIPEPTSGHTNAVSFMIGEKAADLIKDTWMTG
| Type | Start | End | Length |
| CDS |
78684 |
78921 |
238 |
| CDS |
78987 |
79068 |
82 |
| CDS |
79128 |
79333 |
206 |
| CDS |
79393 |
80588 |
1196 |
| intron |
78922 |
78986 |
65 |
| intron |
79069 |
79127 |
59 |
| intron |
79334 |
79392 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_310328 |
AGAP003781-PA [Anopheles gambiae str. PEST] gb|EAA45200.5| AGAP003781-PA [Anopheles gambiae str. PEST] |
1e-162 |
| InterPro |
IPR000172 |
Glucose-methanol-choline oxidoreductase, N-terminal |
|
| InterPro |
IPR012132 |
Glucose-methanol-choline oxidoreductase |
|
| InterPro |
IPR007867 |
Glucose-methanol-choline oxidoreductase, C-terminal |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(BP) |
GO:0006066 |
alcohol metabolic process |
|
| Gene Ontology(MF) |
GO:0016614 |
oxidoreductase activity, acting on CH-OH group of donors |
|
| Gene Ontology(MF) |
GO:0008812 |
choline dehydrogenase activity |
|
| Gene Ontology(MF) |
GO:0050660 |
flavin adenine dinucleotide binding |
|
| Pfam |
PF01266.19 |
FAD dependent oxidoreductase |
0.0093 |
| Pfam |
PF00732.14 |
GMC oxidoreductase |
1.1e-68 |
| Pfam |
PF13450.1 |
NAD(P)-binding Rossmann-like domain |
0.0016 |
| Pfam |
PF05834.7 |
Lycopene cyclase protein |
0.012 |
| Pfam |
PF07992.9 |
Pyridine nucleotide-disulphide oxidoreductase |
0.016 |
| Pfam |
PF00890.19 |
FAD binding domain |
1.2e-06 |
| Pfam |
PF05199.8 |
GMC oxidoreductase |
2.6e-33 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.12135 |
| Pn.12136 |
| Pn.04217 |
| Pn.12138 |
| Pn.12139 |
| Pn.02446 |
| Pn.12137 |
| Pn.01797 |
| Pn.02645 |
| Pn.02448 |
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL010194-PA |
| A. gambiae |
AGAP003788 |
| A. gambiae |
AGAP013016 |
| A. gambiae |
AGAP003786 |
| T. castaneum |
TC015724 |
| T. castaneum |
TC015718 |
| D. melanogaster |
FBgn0030592 |
| P. vanderplanki |
Pv.01744 |
| B. mori |
BGIBMGA013006-TA |
| P. vanderplanki |
Pv.05520 |
| N. vitripennis |
NV15459-PA |
| S. invicta |
SI2.2.0_03320 |
| A. mellifera |
GB19663-PA |
| S. invicta |
SI2.2.0_11225 |
| P. vanderplanki |
Pv.14907 |
| B. mori |
BGIBMGA013215-TA |
| H. melpomene |
HMEL010504-PA |
| T. castaneum |
TC015371 |
| H. melpomene |
HMEL010190-PA |
| B. mori |
BGIBMGA012996-TA |
| T. castaneum |
TC016355 |
| A. aegypti |
AAEL004003 |
| A. gambiae |
AGAP003782 |
| P. humanus |
PHUM448880-PA |
| N. vitripennis |
NV14796-PA |
| H. melpomene |
HMEL022537-PA |
| C. quinquefasciatus |
CPIJ007619 |
| H. melpomene |
HMEL010191-PA |
| C. quinquefasciatus |
CPIJ007624 |
| B. mori |
BGIBMGA013003-TA |
| D. melanogaster |
FBgn0030598 |
| S. invicta |
SI2.2.0_12131 |
| H. sapiens |
ENSP00000319851 |
| D. plexippus |
DPOGS204388PA |
| A. aegypti |
AAEL011808 |
| C. quinquefasciatus |
CPIJ012297 |
| S. invicta |
SI2.2.0_03772 |
| T. castaneum |
TC010931 |
| P. vanderplanki |
Pv.10586 |
| H. melpomene |
HMEL014154-PA |
| A. gambiae |
AGAP002552 |
| T. castaneum |
TC015717 |
| A. aegypti |
AAEL004021 |
| N. vitripennis |
NV12551-PA |
| D. melanogaster |
FBgn0001112 |
| D. melanogaster |
FBgn0039415 |
| H. melpomene |
HMEL007815-PA |
| D. plexippus |
DPOGS207060PA |
| N. vitripennis |
NV50436-PA |
| S. invicta |
SI2.2.0_07596 |
| A. aegypti |
AAEL011809 |
| P. humanus |
PHUM448870-PA |
| A. gambiae |
AGAP003783 |
| A. aegypti |
AAEL004015 |
| C. quinquefasciatus |
CPIJ017019 |
| A. mellifera |
GB19418-PA |
| N. vitripennis |
NV15463-PA |
| N. vitripennis |
NV17539-PA |
| D. plexippus |
DPOGS207052PA |
| D. plexippus |
DPOGS207061PA |
| D. plexippus |
DPOGS207059PA |
| D. plexippus |
DPOGS207057PA |
| N. vitripennis |
NV17029-PA |
| A. aegypti |
AAEL004009 |
| S. invicta |
SI2.2.0_09874 |
| A. aegypti |
AAEL004002 |
| P. humanus |
PHUM448830-PA |
| A. aegypti |
AAEL011806 |
| N. vitripennis |
NV17918-PA |
| N. vitripennis |
NV17717-PA |
| A. aegypti |
AAEL004036 |
| P. humanus |
PHUM448790-PA |
| B. mori |
BGIBMGA013001-TA |
| P. humanus |
PHUM254550-PA |
| P. vanderplanki |
Pv.04280 |
| T. castaneum |
TC015712 |
| N. vitripennis |
NV15454-PA |
| S. invicta |
SI2.2.0_06973 |
| C. quinquefasciatus |
CPIJ005120 |
| A. mellifera |
GB13150-PA |
| P. vanderplanki |
Pv.06016 |
| D. melanogaster |
FBgn0030591 |
| D. melanogaster |
FBgn0030587 |
| C. quinquefasciatus |
CPIJ009583 |
| C. quinquefasciatus |
CPIJ001368 |
| D. melanogaster |
FBgn0030589 |
| A. aegypti |
AAEL004013 |
| B. mori |
BGIBMGA012863-TA |
| T. castaneum |
TC005874 |
| A. mellifera |
GB16967-PA |
| T. castaneum |
TC015725 |
| A. gambiae |
AGAP002557 |
| D. plexippus |
DPOGS207058PA |
| A. gambiae |
AGAP003787 |
| N. vitripennis |
NV13278-PA |
| D. plexippus |
DPOGS207054PA |
| P. vanderplanki |
Pv.15877 |
| C. quinquefasciatus |
CPIJ001369 |
| T. castaneum |
TC015715 |
| A. mellifera |
GB10142-PA |
| A. gambiae |
AGAP003750 |
| S. invicta |
SI2.2.0_02455 |
| B. mori |
BGIBMGA013009-TA |
| H. melpomene |
HMEL010460-PA |
| C. quinquefasciatus |
CPIJ802105 |
| S. invicta |
SI2.2.0_01305 |
| P. humanus |
PHUM448780-PA |
| A. aegypti |
AAEL004014 |
| A. aegypti |
AAEL005769 |
| C. quinquefasciatus |
CPIJ007618 |
| B. mori |
BGIBMGA013005-TA |
| D. plexippus |
DPOGS207055PA |
| A. gambiae |
AGAP003781 |
| N. vitripennis |
NV50228-PA |
| T. castaneum |
TC015721 |
| T. castaneum |
TC015719 |
| B. mori |
BGIBMGA013002-TA |
| N. vitripennis |
NV12928-PA |
| C. quinquefasciatus |
CPIJ001370 |
| D. melanogaster |
FBgn0030596 |
| P. vanderplanki |
Pv.04479 |
| C. quinquefasciatus |
CPIJ012296 |
| A. mellifera |
GB17446-PA |
| P. humanus |
PHUM448810-PA |
| N. vitripennis |
NV15461-PA |
| S. invicta |
SI2.2.0_11913 |
| S. invicta |
SI2.2.0_10841 |
| P. vanderplanki |
Pv.01743 |
| S. invicta |
SI2.2.0_08328 |
| H. melpomene |
HMEL009418-PA |
| N. vitripennis |
NV10343-PA |
| P. vanderplanki |
Pv.13853 |
| S. invicta |
SI2.2.0_05132 |
| A. gambiae |
AGAP013492 |
| A. gambiae |
AGAP002551 |
| S. invicta |
SI2.2.0_14909 |
| A. gambiae |
AGAP003784 |
| B. mori |
BGIBMGA013007-TA |
| N. vitripennis |
NV14798-PA |
| H. melpomene |
HMEL010189-PA |
| D. plexippus |
DPOGS206908PA |
| S. invicta |
SI2.2.0_02334 |
| A. mellifera |
GB16735-PA |
| S. invicta |
SI2.2.0_06971 |
| D. melanogaster |
FBgn0030590 |
| T. castaneum |
TC015713 |
| A. gambiae |
AGAP003780 |
| B. mori |
BGIBMGA013008-TA |
| M. musculus |
ENSMUSG00000015970 |
| D. plexippus |
DPOGS205789PA |
| S. invicta |
SI2.2.0_11950 |
| N. vitripennis |
NV14797-PA |
| D. plexippus |
DPOGS207053PA |
| N. vitripennis |
NV17030-PA |
| P. humanus |
PHUM448820-PA |
| P. vanderplanki |
Pv.09678 |
| S. invicta |
SI2.2.0_10128 |
| P. humanus |
PHUM172690-PA |
| D. plexippus |
DPOGS212710PA |
| D. melanogaster |
FBgn0030586 |
| A. mellifera |
GB12397-PA |
| N. vitripennis |
NV50139-PA |
| A. gambiae |
AGAP012979 |
| S. invicta |
SI2.2.0_00375 |
| S. invicta |
SI2.2.0_01396 |
| S. invicta |
SI2.2.0_09501 |
| P. vanderplanki |
Pv.01745 |
| N. vitripennis |
NV15462-PA |
| A. mellifera |
GB20157-PA |
| T. castaneum |
TC015700 |
| S. invicta |
SI2.2.0_12666 |
| D. melanogaster |
FBgn0030588 |
| N. vitripennis |
NV12129-PA |
| N. vitripennis |
NV23140-PA |
| A. aegypti |
AAEL004028 |
| N. vitripennis |
NV15460-PA |
| N. vitripennis |
NV15455-PA |
| T. castaneum |
TC008348 |
| C. quinquefasciatus |
CPIJ007625 |
| C. quinquefasciatus |
CPIJ001367 |
| B. mori |
BGIBMGA012872-TA |