MidgeBase gene description page [Pn.03388]
Outline
| Gene ID | Pn.03388 |
| Type | Protein coding gene |
| Scaffold | PnScaf2790 |
| Start | 71756 |
| End | 73621 |
| Direction | - |
Sequence
Transcript: 1458 (bp)
ATGAAATTGTTCACTTTAATAACATTTCTCTGCGTTTCTGCCGTGTTGGCAGCCGAGAGCGATGTTCTCGATCTAACTGACTCAGATTTCGATACTACAATTAAGGAATATCCGGTCGTGCTTGCAATGTTTTATGCCCCATGGTGCGGTCATTGCAAGAAGCTCAAACCAGAATATTCCAAGGCAGCCGAGTTGATGAGAACCGACGATCCGCCAGTCACTTTCGTAAAAGTTGACTGTACCGAAGGCGGCAAAGACACTTGCAGCAAGTTCGGTGTCTCTGGCTATCCAACTCTGAAGATTTTCCGCAACGGCGAGAACCCTCAGGAATACAATGGCCCACGTGAAGCGACTGGAATTGTTAAATACATGAGAGCACAAGTCGGACCCTCGTCGAAAGACTTGCTCACGGTTGAGGCCTACGAGAAGTTCTTGAGCGTCCAAGAAGGGTCAATTGTTGGACTTTTCGAAAAAGAGAGCGACTTAAAGACCGTTTTCCTCAAGTATGCCGATCTCCAGCGCGAAAAGCACCGCTTCGCTCACTCGTCTGCCGCTGAAGTTTTGGAAAAGGCCGGCGAAAAAGACGCCATTCTTCTCTACCGCGCCCCACAATTGAGCAACAAATTCGAGCCATCGTTTGTGAAATTCGAAGGCAAGGATTCCGGCGAGCTTAGGGAATTCGTCAAAAAGAACTTCCACGGATTGGTCGGCGTGCGCTCGCGCGACTCAATGAACGACTTTGGAACACCACTTGTTGTTGCTTACTACGCCGTTGACTACGTTAAGAATCCAAAAGGCACAAACTACTGGCGCAATCGCATCCTCAAAGTTGCCAAAGAATGGCAAGGAAAGATTAACTTTGCCATCGCCGCCAAAGACGAATTCCAGCACGAACTGAACGAGTACGGCTATGACTATGTCGGCGACAAGCCTCTGATTTTGGCTCGCGACGCCTCAAATCAGAAATTCATCATGAAAGACGAATTCTCCGTTGATAATCTTCAGGCTTTCGTTAATGATCTCAACGAAGGCAACTTGGAACCTTATGTTAAGTCCGAGGCAATTCCAGTCGACAATGACGGTCCAGTAACAGTGGTCGTTGCCAAGAACTTCAATGAGGCAGTTCCAAAGGACAAGGACGTCCTGATTGAATTCTACGCACCATGGTGCGGTCACTGCAAGAAGCTCGCACCAGTGTTCGATGAGCTCGGCGAGAAATTGAAGGGAGAAGATGTTGTCATTGCCAAGATGGATGCTACAGCCAATGACGTTCCACCAGGCTTTGATGTTCGTGGCTTCCCAACACTCTTCTGGTTGCCGAAGGGCAAGCACGATAATCCAGTCCGATATGATGGCGGTCGCGAGTTGAACGATTTCATCAGCTATATTAGCAAGCATGCCACGAGCGAATTAAAGAAATTCGATCGTTCGGGCAATGAGAAGAAGAAGACAGAATTG
Protein: 486 (aa)
MKLFTLITFLCVSAVLAAESDVLDLTDSDFDTTIKEYPVVLAMFYAPWCGHCKKLKPEYSKAAELMRTDDPPVTFVKVDCTEGGKDTCSKFGVSGYPTLKIFRNGENPQEYNGPREATGIVKYMRAQVGPSSKDLLTVEAYEKFLSVQEGSIVGLFEKESDLKTVFLKYADLQREKHRFAHSSAAEVLEKAGEKDAILLYRAPQLSNKFEPSFVKFEGKDSGELREFVKKNFHGLVGVRSRDSMNDFGTPLVVAYYAVDYVKNPKGTNYWRNRILKVAKEWQGKINFAIAAKDEFQHELNEYGYDYVGDKPLILARDASNQKFIMKDEFSVDNLQAFVNDLNEGNLEPYVKSEAIPVDNDGPVTVVVAKNFNEAVPKDKDVLIEFYAPWCGHCKKLAPVFDELGEKLKGEDVVIAKMDATANDVPPGFDVRGFPTLFWLPKGKHDNPVRYDGGRELNDFISYISKHATSELKKFDRSGNEKKKTEL
| Type | Start | End | Length |
| CDS |
71759 |
72227 |
469 |
| CDS |
72301 |
72708 |
408 |
| CDS |
72773 |
73001 |
229 |
| CDS |
73071 |
73260 |
190 |
| CDS |
73336 |
73349 |
14 |
| CDS |
73474 |
73621 |
148 |
| intron |
72228 |
72300 |
73 |
| intron |
72709 |
72772 |
64 |
| intron |
73002 |
73070 |
69 |
| intron |
73261 |
73335 |
75 |
| intron |
73350 |
73473 |
124 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR23032 |
hypothetical protein AND_13790 [Anopheles darlingi] |
0.0 |
| InterPro |
IPR005746 |
Thioredoxin |
|
| InterPro |
IPR005788 |
Disulphide isomerase |
|
| InterPro |
IPR005792 |
Protein disulphide isomerase |
|
| InterPro |
IPR013766 |
Thioredoxin domain |
|
| InterPro |
IPR012336 |
Thioredoxin-like fold |
|
| InterPro |
IPR017937 |
Thioredoxin, conserved site |
|
| Gene Ontology(BP) |
GO:0006662 |
glycerol ether metabolic process |
|
| Gene Ontology(BP) |
GO:0045454 |
cell redox homeostasis |
|
| Gene Ontology(CC) |
GO:0005783 |
endoplasmic reticulum |
|
| Gene Ontology(MF) |
GO:0015035 |
protein disulfide oxidoreductase activity |
|
| Gene Ontology(MF) |
GO:0009055 |
electron carrier activity |
|
| Gene Ontology(MF) |
GO:0016853 |
isomerase activity |
|
| Pfam |
PF13848.1 |
Thioredoxin-like domain |
3.2e-44 |
| Pfam |
PF13905.1 |
Thioredoxin-like |
2.6e-10 |
| Pfam |
PF13899.1 |
Thioredoxin-like |
1.9e-12 |
| Pfam |
PF00578.16 |
AhpC/TSA family |
4.2e-07 |
| Pfam |
PF08534.5 |
Redoxin |
9e-05 |
| Pfam |
PF13098.1 |
Thioredoxin-like domain |
8.6e-14 |
| Pfam |
PF10122.4 |
Mu-like prophage protein Com |
0.033 |
| Pfam |
PF00085.15 |
Thioredoxin |
1.1e-61 |
| Pfam |
PF13462.1 |
Thioredoxin |
0.021 |
| Pfam |
PF00462.19 |
Glutaredoxin |
0.00053 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000025823 |
| D. plexippus |
DPOGS215686PA |
| T. castaneum |
TC013598 |
| C. quinquefasciatus |
CPIJ015893 |
| B. mori |
BGIBMGA003587-TA |
| P. vanderplanki |
Pv.01497 |
| T. castaneum |
TC010894 |
| P. humanus |
PHUM380480-PA |
| H. melpomene |
HMEL004070-PA |
| A. aegypti |
AAEL001432 |
| A. gambiae |
AGAP007393 |
| S. invicta |
SI2.2.0_04931 |
| D. melanogaster |
FBgn0033663 |
| A. mellifera |
GB10238-PA |
| H. sapiens |
ENSP00000300289 |
| H. sapiens |
ENSP00000438260 |
| H. sapiens |
ENSP00000286091 |
| N. vitripennis |
NV17633-PA |