MidgeBase gene description page [Pn.03382]
Outline
| Gene ID | Pn.03382 |
| Type | Protein coding gene |
| Scaffold | PnScaf2790 |
| Start | 60558 |
| End | 64636 |
| Direction | + |
Sequence
Transcript: 3690 (bp)
ATGAAACGTCGGCAACATGATGAGGACAATGGCTTCGGCGAGCACGGTGGTTACATGTCCGCCAAAATCAACAAGCTGGAAGAGCAGTTTTCGACTTTGCAAAAGGAAGTTAGAAAGACCAATTTATTTGAGGGAATATCAATATTTGTGAACGGAAGGACCAATCCTTCGGCCGATGACCTCAAAAGAATAATGCTTGAAAATGGCGGCATATTTCATCACTACCAAAGGTCACACACGAAATTCGTTATTGCGAGCAATCTCCCGGATGTAAAAATTCGATCTAACATCACGAAGAACATCATTAAGCCAGAATGGATAGTGGACTGTCTCAAGGAAAATCGCCTCATCGACTACTCGAATTATTTGCTCTACACTAACAAAAACTCGCATCAGCCTCAGCTGTTCTTCAAGAAAGCAGAGCCGGAGAATGAAGAGCAGAGCTTTGAGTACAGTCTCGACTCGCTGAATCAAAAGATGCAGCAACAAGAAAAAGATGTTGAGAAAACGGGCACAGCAGTTGATAAAAATTTTCTGCATGAATTCCTTAACAACTCTCGCTTGCATTGCATTTCGACGATGGCGAGCAGTTTCAAGTTTTACATCACTGACCTCAGAAAGAAGCACATGGGAATTTTTCCAGAGAGAGAGGTGCTCAAAACGAAGTTGCATCAGGTTGAAAATTTCAAGGAATATGAGAATGTTATCATGCACATCGACATGGACTGCTTTTTCGTGTCGGTTGGTCTAAGGAACAAGCCCCATTTGAAGGGAAAACCAGTAGCTGTTACGCACTCGAAGGGAAAAGCCGGAGAAAAATCGGATGACTTCATGTCAATGTCCGAAATAGCGAGCTGCTCTTATGAAGCAAGAAAGCTTGGACTTAAGAACGGCATGTTTGTGGGTCAAGCTTTGAAACTCTGCCCAGATTTGCAGACCATTCCATATGAATTCGAAGAGTATAGAAAAACGGCTTACAAGCTCTACGACACTGTAGCAAAGTACACATTGGACATTGAGGCTGTGAGTTGTGACGAGTTGTATGCGGACCTGACAAACGCCTTAAACGAGTGCAAGGTGAATCTGATGGAATTCGTTTCGCTCTTAAGGCAGGAGATTTTTGAGCAAACCTCATGCACGTGCTCAGTTGGAATTGGTGAAAATCGCTTACAAGCAAGAATGGCAACAAAAGAGGCAAAGCCCAATGGCCAATACGAGCTCCTCTCGACGAACATTTCCGAATACATGAAGAACAAAAAGATAAGGGATTTGCCAGGTGTCGGCTACTCGACGGAGCACACACTTAAGCAATTGAATTTAGAGACTTGTGGAGAAATTCAAGAGTTTCCTGTGCACCAGTTGCAACATCATTTTGGCAAAAAGTTTGGGGAGACTCTGCTCATGATGTCCAAAGGAATCGACGAAAAAAAATTGAATTTCGATCAAGTCCGCAAATCGGTGAGCGTTGATGTAAACTATGGCATTCGATTTAACGACGACGAAGAAGTCAAGCCGTTCTTGAAACAAGTGTGTGAGGAGCTGAGCAAACGACTCGTTGAGATTGAAAAGAAGGGAAAATGTGTGACAATAAAAATCATGATGCGCGCAAAGAATGCATCAGCAATTTCTAAAAAGTTCCTGGGTTATGGAGAAGCTGACAAGGTCAGTAAGCAAGTGCAATTGAGTTCATCGACAAACGATGCTTTCGTGATTTTCCAACATGCTTTAAGTCTCTTGAAGAGCTTCAATATTCCGGCACATGATTTGAGAGGAATCGGTGTGCAAGTGAGCAAACTCGACGAGGAACAAGATGAAAAATCCAAAGGCAAGCTCGTGGAAATGTTTAAAAAGATGTCAGAAAACCAAGATGCCAAGAAGGTCAAAGTGGAGAGAATAAAATTGGAGCCGAATGTGTCGAGGGCAAATTTATCGCCGCCAAAAAGAAAGCAGCGAACTTTGAAAAAGGTCGCGTCGAGTTCCAACGTCACTTCAGTTGCAGACTTATTCACAGCAAAAAAGTCGAGCGGTCAAAGAAGAAAGTACATTGATCCCGATGTACTCGCAGAGCTACCACCTGACATTGTGGAGGAAATTTTGCGAGATTATGACACAAATGAGGAAGTCGAGCAGCAACTGCCAGAAGAGCCGGCGAGAATTGTAGAGCCAAAAGCTGAGCCTCAAGTGACTGTAACGCTTGCCAACAACTTTTTCATGGATGACGCTTGGAGATCAACAATAATCGAGTGGATTGAAAATAATCCTAAACCAGCCTCATACATGACGGACATCATGGGTGGAAATTTGGTGGAATTGATAAGAGCAAAAAATCTGGAGCTTCCCTTTCTCATTATGAGATTTTTGCATCGGCATGCGGAAAATAGCAATAGAGATTGGCAAGATGCTTACAACACAATTGAATCCGCTTTGCAAGAGGAAATGAAGAAAAACTTCAACGGTCGAAAACTGAGTGCGGCAGCGGGTGCCACAAAGCCTCACTGTAATGTCGGCACGATCGGTCATGTTGATCATGGAAAGACTACTTTGACAGCGGCAATAACAAAGGTTCTGGAAAAGAGAGGCCTCGCAAACTTTACATCCTACGACGAAATCGACAAAGCGCCAGAGGAGAAAGCTCGCGGAATTACAATCAATGCCGCCCACATTGGCTACGAAACCGACAAAAGAACTTATGCTCACACAGACTGTCCAGGACATAGCGACTACATTAAAAATATGATTTCGGGTGCGAGCCAAATGGACGGCAGCATCCTGGTCGTCGCAGCAGATGACGGTCAAATGCCACAGACACGTGAGCATTTGCTGTTGGCAAAACAAGTCGGAATCGAGAATATCGTGGTTTATATAAACAAGGCCGATCAAGCGGACAAGGAAATGCTGGAGCTTGTTGAGATCGAGCTGAGAGAGCTACTGTGCGATTATGGTTTCGACGGCGGCAACTGTCCCATGATCAGTGGATCGGCCCTGAAAGCACTGCAAGGCGACGAGAGTGAAATAGGCGAACAGTCAATTTTGAAACTTCTCGATGCCATCGACAACTATATTCCAACGCCAACACGTGATCTAAAGTCGCCTGTACTGATGCCGATCGACAATTTTTTTACGGTGCCGGGTCGAGGCAGTGTAGTGACAGGAACCATAAAGCGAGGCACGATGATTAAAAACAGCGAAATAGAGTTGTTAGGCTTCGATCAGAAAATAAAGTCGACCGTGTCCGACATTCAGATTTTCAAAAGGAGCCACAATCAGGCGCTTGCTGGCGACAATGTGGGAGTTCTTCTCAGAAACATCAAAATCAACAATATTCAGCGAGGAATGCTCTTGTGTGCAGCAAACACTGAAACGCTTTCGAATCATTTTGACGCCAACATGTATTTACTTTCGCGAGGTGAAGGAGGAAGGAAACTACCTCTCGCGTCGAAATACATTCAGCAACTGTTTAGCCGCACATGGAATATTCCCGCACGTGTTGATTTAGAAAATAATCAAATGCTGATGCCTGGTGAGCATGGAAAAGTAAGATTAACGCTCTTCAAAAAGATGGTCATGTCGAATGGCCAGCAATTCACGATTAGAGAGCAAGGAATCACTGTAGCAACTGGAGTGATAACGGAAAGACATGAACCTGTAACGTTACCACTCAATAAATTATCAAAACTTGTATTAAACATT
Protein: 1230 (aa)
MKRRQHDEDNGFGEHGGYMSAKINKLEEQFSTLQKEVRKTNLFEGISIFVNGRTNPSADDLKRIMLENGGIFHHYQRSHTKFVIASNLPDVKIRSNITKNIIKPEWIVDCLKENRLIDYSNYLLYTNKNSHQPQLFFKKAEPENEEQSFEYSLDSLNQKMQQQEKDVEKTGTAVDKNFLHEFLNNSRLHCISTMASSFKFYITDLRKKHMGIFPEREVLKTKLHQVENFKEYENVIMHIDMDCFFVSVGLRNKPHLKGKPVAVTHSKGKAGEKSDDFMSMSEIASCSYEARKLGLKNGMFVGQALKLCPDLQTIPYEFEEYRKTAYKLYDTVAKYTLDIEAVSCDELYADLTNALNECKVNLMEFVSLLRQEIFEQTSCTCSVGIGENRLQARMATKEAKPNGQYELLSTNISEYMKNKKIRDLPGVGYSTEHTLKQLNLETCGEIQEFPVHQLQHHFGKKFGETLLMMSKGIDEKKLNFDQVRKSVSVDVNYGIRFNDDEEVKPFLKQVCEELSKRLVEIEKKGKCVTIKIMMRAKNASAISKKFLGYGEADKVSKQVQLSSSTNDAFVIFQHALSLLKSFNIPAHDLRGIGVQVSKLDEEQDEKSKGKLVEMFKKMSENQDAKKVKVERIKLEPNVSRANLSPPKRKQRTLKKVASSSNVTSVADLFTAKKSSGQRRKYIDPDVLAELPPDIVEEILRDYDTNEEVEQQLPEEPARIVEPKAEPQVTVTLANNFFMDDAWRSTIIEWIENNPKPASYMTDIMGGNLVELIRAKNLELPFLIMRFLHRHAENSNRDWQDAYNTIESALQEEMKKNFNGRKLSAAAGATKPHCNVGTIGHVDHGKTTLTAAITKVLEKRGLANFTSYDEIDKAPEEKARGITINAAHIGYETDKRTYAHTDCPGHSDYIKNMISGASQMDGSILVVAADDGQMPQTREHLLLAKQVGIENIVVYINKADQADKEMLELVEIELRELLCDYGFDGGNCPMISGSALKALQGDESEIGEQSILKLLDAIDNYIPTPTRDLKSPVLMPIDNFFTVPGRGSVVTGTIKRGTMIKNSEIELLGFDQKIKSTVSDIQIFKRSHNQALAGDNVGVLLRNIKINNIQRGMLLCAANTETLSNHFDANMYLLSRGEGGRKLPLASKYIQQLFSRTWNIPARVDLENNQMLMPGEHGKVRLTLFKKMVMSNGQQFTIREQGITVATGVITERHEPVTLPLNKLSKLVLNI
| Type | Start | End | Length |
| CDS |
60558 |
60690 |
133 |
| CDS |
60757 |
63092 |
2336 |
| CDS |
63358 |
63598 |
241 |
| CDS |
63654 |
64633 |
980 |
| intron |
60691 |
60756 |
66 |
| intron |
63093 |
63357 |
265 |
| intron |
63599 |
63653 |
55 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001655915 |
elongation factor tu (ef-tu) [Aedes aegypti] gb|EAT35680.1| elongation factor tu (ef-tu) [Aedes aegypti] |
1e-173 |
| InterPro |
IPR017962 |
DNA polymerase IV/DinB homologue, little finger domain |
|
| InterPro |
IPR017961 |
DNA polymerase, Y-family, little finger domain |
|
| InterPro |
IPR009001 |
Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal |
|
| InterPro |
IPR001126 |
DNA-repair protein, UmuC-like |
|
| InterPro |
IPR000795 |
Protein synthesis factor, GTP-binding |
|
| InterPro |
IPR004160 |
Translation elongation factor EFTu/EF1A, C-terminal |
|
| InterPro |
IPR004161 |
Translation elongation factor EFTu/EF1A, domain 2 |
|
| InterPro |
IPR017963 |
DNA-repair protein, UmuC-like, N-terminal |
|
| InterPro |
IPR009000 |
Translation elongation/initiation factor/Ribosomal, beta-barrel |
|
| InterPro |
IPR001357 |
BRCT domain |
|
| Gene Ontology(BP) |
GO:0006281 |
DNA repair |
|
| Gene Ontology(MF) |
GO:0003887 |
DNA-directed DNA polymerase activity |
|
| Gene Ontology(MF) |
GO:0003684 |
damaged DNA binding |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF11798.3 |
IMS family HHH motif |
3.4e-05 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
0.00073 |
| Pfam |
PF14377.1 |
Domain of unknown function (DUF4414) |
0.0029 |
| Pfam |
PF08477.8 |
Miro-like protein |
0.019 |
| Pfam |
PF12718.2 |
Tropomyosin like |
2.4 |
| Pfam |
PF03143.12 |
Elongation factor Tu C-terminal domain |
8.9e-18 |
| Pfam |
PF00817.15 |
impB/mucB/samB family |
3e-41 |
| Pfam |
PF03144.20 |
Elongation factor Tu domain 2 |
3.3e-11 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
1.1e-56 |
| Pfam |
PF08827.6 |
Domain of unknown function (DUF1805) |
0.0052 |
| Pfam |
PF00533.21 |
BRCA1 C Terminus (BRCT) domain |
8.1e-08 |
| Pfam |
PF11799.3 |
impB/mucB/samB family C-terminal |
2e-18 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS202630PA |
| P. humanus |
PHUM333130-PA |
| D. melanogaster |
FBgn0035150 |
| A. aegypti |
AAEL002250 |
| A. gambiae |
AGAP005939 |
| B. mori |
BGIBMGA008315-TA |
| A. mellifera |
GB12986-PA |
| S. invicta |
SI2.2.0_07182 |
| M. musculus |
ENSMUSG00000026082 |
| H. melpomene |
HMEL010220-PA |
| N. vitripennis |
NV50333-PA |
| H. sapiens |
ENSP00000377091 |
| T. castaneum |
TC014950 |
| H. sapiens |
ENSP00000258428 |
| C. quinquefasciatus |
CPIJ007351 |