MidgeBase gene description page [Pn.03360]
Outline
| Gene ID | Pn.03360 |
| Type | Protein coding gene |
| Scaffold | PnScaf2789 |
| Start | 58 |
| End | 1548 |
| Direction | + |
Sequence
Transcript: 1038 (bp)
ATGACGGCGTTCGACGCGAGGAGTTGGCAGTTCATGTGCATCGCGTCAACGTTTTCGAGGACTCGTTCCGACGAGGAAGGACAGGACGCGGGTGGCTTGTTGCGCGAATGGTACATGATTATTTCACGCGAAATCTTCAATCCAATGTATGCACTCTTCACGGTGTCGCCTGGTGATCGCGTTACCTACATGATCAATCCATCGTCGCACTGCAATCCGAATCACTTGTGCTACTTCAAGTTTGTTGGTCGTGTAATAGCAAAGGCAATTTACGACAACAAATTGCTCGAATGCTACTTTACGAGAGCTTTTTACAAGCACATACTCGGCATTCAAGTCAAATATACCGACATGGAAAGTGAAGACTATGCATTCTACCAAGGTCTCGTCTATCTAATGGAGAACCACGTCGACTCACTCGGCTACGAACTGACGTTCAGCTTAGAGGTGCAAGAATTCGGTGTGACCGATGTGCGCGAGCTAAAACCGAATGGCTGTAATATTCCCGTTACGGAGGAGAACAAGCTCGAGTACATTCAGCTCGTGTGTCAAATGAAAATGAGTGGATCTATTAAACAACAACTGAATGCGTTCTTGGAAGGATTTTATGATATCATCCCAAAGAGACTGATTTCGATTTTCAACGAACAAGAATTGGAATTGTTGATTTCTGGCCTGCCAAATATTGACATTGAAGATTTGCGCGCAAACACCGAATATCACAAGTACTTGGTCACATCAATACAGATTCAATGGTTCTGGCGAGCATTGCGTAGTTTCGATCAAGCAGAACGTGCCAAGTTCCTTCAATTTGTTACAGGCACATCAAAGGTTCCGCTTCAAGGATTCGGCGCTCTCGAAGGAATGAACGGCATTCAGAAGTTCCAAATTCACCGAGACGACCGCTCAACTGATCGACTTCCATCGGCACACACATGCTTCAACCAATTGGACCTGCCAGTCTACAAGTCATACGACAAATTGCGAACTAATTTACTGAAGGCTATCCACGAGTGCTCGGAGGGATTCGGATTTGCC
Protein: 346 (aa)
MTAFDARSWQFMCIASTFSRTRSDEEGQDAGGLLREWYMIISREIFNPMYALFTVSPGDRVTYMINPSSHCNPNHLCYFKFVGRVIAKAIYDNKLLECYFTRAFYKHILGIQVKYTDMESEDYAFYQGLVYLMENHVDSLGYELTFSLEVQEFGVTDVRELKPNGCNIPVTEENKLEYIQLVCQMKMSGSIKQQLNAFLEGFYDIIPKRLISIFNEQELELLISGLPNIDIEDLRANTEYHKYLVTSIQIQWFWRALRSFDQAERAKFLQFVTGTSKVPLQGFGALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPVYKSYDKLRTNLLKAIHECSEGFGFA
| Type | Start | End | Length |
| CDS |
58 |
126 |
69 |
| CDS |
186 |
375 |
190 |
| CDS |
480 |
801 |
322 |
| CDS |
918 |
1083 |
166 |
| CDS |
1190 |
1380 |
191 |
| CDS |
1446 |
1545 |
100 |
| intron |
127 |
185 |
59 |
| intron |
376 |
479 |
104 |
| intron |
802 |
917 |
116 |
| intron |
1084 |
1189 |
106 |
| intron |
1381 |
1445 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFN65870 |
E3 ubiquitin-protein ligase HUWE1 [Camponotus floridanus] |
1e-175 |
| InterPro |
IPR000569 |
HECT |
|
| Gene Ontology(BP) |
GO:0006464 |
protein modification process |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0016881 |
acid-amino acid ligase activity |
|
| Pfam |
PF00632.20 |
HECT-domain (ubiquitin-transferase) |
2.6e-94 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.01222 |
| Pn.13131 |
| Pn.02608 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000401253 |
| P. vanderplanki |
Pv.08798 |
| A. mellifera |
GB18736-PA |
| A. mellifera |
GB12051-PA |
| M. musculus |
ENSMUSG00000025261 |
| H. sapiens |
ENSP00000340648 |
| S. invicta |
SI2.2.0_04457 |
| T. castaneum |
TC004152 |
| P. humanus |
PHUM461390-PA |
| H. sapiens |
ENSP00000218328 |
| D. melanogaster |
FBgn0030674 |
| H. sapiens |
ENSP00000262854 |
| H. sapiens |
ENSP00000403236 |
| A. mellifera |
GB18867-PA |