MidgeBase gene description page [Pn.03283]
Outline
| Gene ID | Pn.03283 |
| Type | Protein coding gene |
| Scaffold | PnScaf2719 |
| Start | 38826 |
| End | 41051 |
| Direction | + |
Sequence
Transcript: 1881 (bp)
ATGAAGCTATTACCGATTCCTTTGTCACCGTTAGGTGCACCGCCTTTGGGCATGTGGAGCTCGGATTTCTTGTGGCGCTATCCGGCCGCGCCGCCGAGTCCTCTGGCCGAGCTAAAGACGCAGCTGCCGTCGCAGCTCTCGTCCGATCCGCGTCTTTGGGGCCGCGAAGAGGTCGTCATCTTCCTGCGATGGACCGAGCGCGAGTTCGACCTTCCCAAATTCGAGCTGGATCTCTTTCAAATGAACGGAAAAGCACTGTGCTTGCTCACGAAGAACGATCTTGCTGAGCGGTGTCCAGGCGCCGGTGACATAATTCACAACGTGTTGCAACTGTTGATTCGCGACGCACAGATGCTGCAGCGACCGTTCAGGTCCGATTTGCCGAGCAGCCCGATTACGCCAACGAATCGTTACCCTCTGTCACCGCACAGCCATCCGCCGACTCCGAACTGGAATTCTCTCGTGCCACCGAACGGCGAGAACTCATTCTACGCATCGCATTTGCAGCATTTTATGACATCGAATTCGGTCACCCTCAGCCCCGCACCGTCAATTGATTCTCAGGCCGGAAGTCCGCCCGGCACTCAGGAGACGCCATCAACAATGTTCTCAGCGAATAGTACAAATGACGCTGCTCAGACGAGCGCCAATGATTCTCCGTCGGAAGCTAGGTCGAGCAGTGCGAGCGGCGCTTCCGCAACAGCCGGCAACAGCTCGCGCAGCAGCAGCAACCACAGCGACTCGGAGGACGAGAGCTCGAGCTTTAAGCACAAAATTCCAAAACTGCTTCCGCCACCGTTGCATCACAAGTCGATGTCGCATCAGAAACAGAGCCCGCCGGTCACGCCAATCTTCAAGGAATCTTCATCGTCATCCTCCTCGTCGACAGCGACAACGCCATCATTACTTCCACATCAACTTGCTAGTGATTTTAAGCAGCATAGTATTTTCTTCAACGGAGCCTTGGACGCAGTTTCCAACACAACGAGCGGATCGAGCAGCAGCGCAAGTCCATCGACTCCAACTACTCCCGGATATTTGTCTGTCAAGCGTGAATTCTTCCCCGACACGCCAACCGAGCCCAACACAAATGGTCGCCTCCTCTGGGATTTCCTTCAGCAACTTCTGAATGATCATCAGCAGCGCTACAGCAACTACATCGCGTGGAAGTGCCGCGACACTGGAGTTTTTAAAATTGTTGATCCAGCTGGTTTGGCAAAACTTTGGGGTATTCAGAAGAATCACTTGTCAATGAACTATGATAAGATGTCACGTGCCTTACGCTACTACTACCGTGTGAATATCTTGAGAAAAGTGCAGGGAGAACGCCATTGTTATCAATTTTTGAGGAACCCAACGGAATTAAAGAGCATAAAGAACATTTCGTTGCTGCGTCAATCAATGACGAACCAGCAGCAATCGTCTGCAGCGACCTCTTCAGCACCGTCGTCATCTTCCGTGGAGGCGGCACAAAACTCTGCAGCTGCGCTCCAAGCGTCTGCCTTGGCTAGTTTATTACCACAGAGTACAACCAACTTTCATCATCTAACTGCTGCCCTAGTACAAAGTAGCAACAATCTGAAGCTGCAATTTGCAGGTCGCAGCAATGCGGAAGACGAGCCTCATGATTTGAGCACAACTTCGTCGAATCAGAATGAGAGTTTCATGAAAAATACAGATTGCTATCCACTCATTCATGGAGCTAACGGCCTTACAACCATCCAACTGTTGAGACAGAGCCAGGAGAACTCCTCCTCGCACTCACCATCGTCATCTCCCACTTCATTATCACCTCCCATTCACCATTTATCATTGCACAAAGAGAATCACGAGCAACAGCCGGTCGATGAGATGCCGACAGACTTAAGGAAAATTAATAAT
Protein: 627 (aa)
MKLLPIPLSPLGAPPLGMWSSDFLWRYPAAPPSPLAELKTQLPSQLSSDPRLWGREEVVIFLRWTEREFDLPKFELDLFQMNGKALCLLTKNDLAERCPGAGDIIHNVLQLLIRDAQMLQRPFRSDLPSSPITPTNRYPLSPHSHPPTPNWNSLVPPNGENSFYASHLQHFMTSNSVTLSPAPSIDSQAGSPPGTQETPSTMFSANSTNDAAQTSANDSPSEARSSSASGASATAGNSSRSSSNHSDSEDESSSFKHKIPKLLPPPLHHKSMSHQKQSPPVTPIFKESSSSSSSSTATTPSLLPHQLASDFKQHSIFFNGALDAVSNTTSGSSSSASPSTPTTPGYLSVKREFFPDTPTEPNTNGRLLWDFLQQLLNDHQQRYSNYIAWKCRDTGVFKIVDPAGLAKLWGIQKNHLSMNYDKMSRALRYYYRVNILRKVQGERHCYQFLRNPTELKSIKNISLLRQSMTNQQQSSAATSSAPSSSSVEAAQNSAAALQASALASLLPQSTTNFHHLTAALVQSSNNLKLQFAGRSNAEDEPHDLSTTSSNQNESFMKNTDCYPLIHGANGLTTIQLLRQSQENSSSHSPSSSPTSLSPPIHHLSLHKENHEQQPVDEMPTDLRKINN
| Type | Start | End | Length |
| CDS |
38826 |
39915 |
1090 |
| CDS |
40008 |
40138 |
131 |
| CDS |
40236 |
40354 |
119 |
| CDS |
40421 |
40768 |
348 |
| CDS |
40856 |
41048 |
193 |
| intron |
39916 |
40007 |
92 |
| intron |
40139 |
40235 |
97 |
| intron |
40355 |
40420 |
66 |
| intron |
40769 |
40855 |
87 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001356642 |
GA16373 [Drosophila pseudoobscura pseudoobscura] gb|EAL33707.2| GA16373 [Drosophila pseudoobscura pseudoobscura] |
1e-125 |
| InterPro |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
|
| InterPro |
IPR003118 |
Pointed domain |
|
| InterPro |
IPR013761 |
Sterile alpha motif/pointed domain |
|
| InterPro |
IPR000418 |
Ets |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF02198.11 |
Sterile alpha motif (SAM)/Pointed domain |
9.8e-21 |
| Pfam |
PF00178.17 |
Ets-domain |
4.4e-35 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL016694-PA |
| H. sapiens |
ENSP00000362843 |
| D. melanogaster |
FBgn0000097 |
| A. gambiae |
AGAP009350 |
| D. plexippus |
DPOGS211900PA |
| C. quinquefasciatus |
CPIJ014720 |
| H. sapiens |
ENSP00000362842 |
| N. vitripennis |
NV50266-PA |
| A. mellifera |
GB17935-PA |
| A. aegypti |
AAEL010488 |
| S. invicta |
SI2.2.0_01655 |
| T. castaneum |
TC007831 |
| B. mori |
BGIBMGA001167-TA |
| H. sapiens |
ENSP00000342260 |
| H. sapiens |
ENSP00000379658 |
| P. vanderplanki |
Pv.02160 |
| H. sapiens |
ENSP00000440592 |
| H. sapiens |
ENSP00000441463 |
| P. humanus |
PHUM117320-PA |
| H. sapiens |
ENSP00000341843 |