MidgeBase gene description page [Pn.03265]
Outline
| Gene ID | Pn.03265 |
| Type | Protein coding gene |
| Scaffold | PnScaf2716 |
| Start | 1699 |
| End | 4313 |
| Direction | + |
Sequence
Transcript: 2085 (bp)
ATGGATAGGTTTCTGAAAGAGAAGGAAAATAAGTACTTCGAGGAGAGGCAAAAATACATTCGCGAGACTCTGAACTACCATTTGAGCGAGAATGTAAAGGAGAACGAGTACGAGTACAAAACGAAAAACAATGAAGCTCTCGAATTTTGCGAAGCCTCCAGCTCGTTGTGCTTCACGATTGAGGCGATTTTTCTGCACGGCCTGAAAGAAACGTTCCTTCAAATACTCTCGAATTTCGGTAGCGACGAGACTCAGAAGCCCTCGCCATCGTTCTGGAGCTTTGTGCTGCTCTTTTTGCACAAGCAAGACATAAAAGACATTCAAGCGTACTCGCAGCTATCCTGCGAAATCGGCTACTGCAGAGCGTTCGTGCGCAAGGCACTGAACGAGTCATTGCTTACCTCATATCTCCAAAATATTCGCAAATCGACGTCCACGCTTAAAAAATATTACAATTCGTATGCATTCCTGTTAGACAACGAGCTCATCGAGACAGCAATAAGCCTGCTGCTCGGAGTCGAGAGCTATGTAGTTTTTAATTTGCCCTGCAACTCATCGCTGCTGAACGTGTGGCCCGACGCTCCGCTTCAGTTGTCCGGCTTGTACACGGCGCCGCTCAAGTCGCTTCCCTTTTTGGTCGGCGAAGACGCCGCCGAACTGCTTGTGTCGACGAGCACGCACAACATAGATATTCCGCCGCAAAGAAACAACATCCTCTCCGACATCTACACGCACGAGGTGTCGAATTCAATTTTCAGCAACTCGCCCAACTCCACGCTCGACTTCGACGAGGACGAGAAGTTTGCGAAGTTCGTGAGGAAATTCGACAGCGCTGAAGACGTCAACGAGATTACCAACGATGAGCTTTCGGAACGGATGTGCGAGTCTGTGGACGAGCCGCTGACGGAAAATCGCGACCTCACGTTGCCCCTGGACAACGACGAGGAGAAAATGCAGGAGAGCCAGGACGACGTCACGCCCGAGAATCGGATCGGAAACTCGCTGCTGAGCGGCCAAAACAGCTGGTCCGAGCCGGCACCGCCGGCGATGAAGAAGAAGGTGGAGGAAGTGGAGGAGGAGAATGCAGAGGGCGCCAGTGCAACAAACGAAATTGTCTTCAGCCGGAAACAGTCGGTGAGGTCGAGCATCGACAACCACAGCTTTGAGTCGCTGTTTGCTGAGAAGAACCGGCGGAGCTGCGTTAATTTCAGGGCGGTTTGGGATCAGTTTCAGAAGAGCGTCGAGAGCAGAACCAATGCCAACATTCCGGAGGAAGAGGACAAGCCGGAAGGCTTTGAGGTTGTTCCGCGGCAGTCGCTGAATAAGAGGCAGTCAGAGGAGCTCGAACAGATGGTCGAAATTCTGTGCCGGCTGTCCAACGAAGCGGGACTCGACCAGCAGGGATTTCTGTGCAAGGGATGTCGGTCGCCGTTGATCGACATCTCGAAGGCGACCGTTTGTGGATTCGATGGCTGTTATTACTGTTCTACGTGTGTGTCTAAAGACAAATATGCAATACCTGCAAAAATAATCTACAACTGGGACTTTACTCAATACAGCGTTAGCAAAAGAGCTGCCGATTTTATTTCTGATCATCAGTTTAAGCCATTTATCGATTTCAAAATACTCAACCCAGACATCTACTCATTTATTGACGAAATGAACAATTTGCAAAAACTCCGAATTCAGCTTAACTTCATTCGCGCCTACATTTTCACGTGCTCCGAGAGCACAGTCAGTGAACTGCAGAAGCTTCTGTACGGCAAGGAATATATTTACGAAACTATCCATCTCTACTCGGTCTCCGACCTATATCTTATCCAAAACGGCGGACTCGAGGATATGCTTAAGAAAATTGTTAGTTTCGGCCGCGAGCACTGCTTGAAATGCGTTCTGTGCAGCAACAAGGGATTCATCTGTGAGTACTGCCGTCGCTCGAAAATCATTTATCCCTTCGACGTGGACGACACGATGAGGTGCAATACGTGCGGGACTATCTCGCATATAAACTGCTATAAGCCGACACTGCCGTGTCCGAAGTGTGAGAGGAGGCGAAAGAGGCAAATCACGTCTATTCTCGAGTCC
Protein: 695 (aa)
MDRFLKEKENKYFEERQKYIRETLNYHLSENVKENEYEYKTKNNEALEFCEASSSLCFTIEAIFLHGLKETFLQILSNFGSDETQKPSPSFWSFVLLFLHKQDIKDIQAYSQLSCEIGYCRAFVRKALNESLLTSYLQNIRKSTSTLKKYYNSYAFLLDNELIETAISLLLGVESYVVFNLPCNSSLLNVWPDAPLQLSGLYTAPLKSLPFLVGEDAAELLVSTSTHNIDIPPQRNNILSDIYTHEVSNSIFSNSPNSTLDFDEDEKFAKFVRKFDSAEDVNEITNDELSERMCESVDEPLTENRDLTLPLDNDEEKMQESQDDVTPENRIGNSLLSGQNSWSEPAPPAMKKKVEEVEEENAEGASATNEIVFSRKQSVRSSIDNHSFESLFAEKNRRSCVNFRAVWDQFQKSVESRTNANIPEEEDKPEGFEVVPRQSLNKRQSEELEQMVEILCRLSNEAGLDQQGFLCKGCRSPLIDISKATVCGFDGCYYCSTCVSKDKYAIPAKIIYNWDFTQYSVSKRAADFISDHQFKPFIDFKILNPDIYSFIDEMNNLQKLRIQLNFIRAYIFTCSESTVSELQKLLYGKEYIYETIHLYSVSDLYLIQNGGLEDMLKKIVSFGREHCLKCVLCSNKGFICEYCRRSKIIYPFDVDDTMRCNTCGTISHINCYKPTLPCPKCERRRKRQITSILES
| Type | Start | End | Length |
| CDS |
1699 |
1745 |
47 |
| CDS |
1822 |
1907 |
86 |
| CDS |
1978 |
3467 |
1490 |
| CDS |
3849 |
4310 |
462 |
| intron |
1746 |
1821 |
76 |
| intron |
1908 |
1977 |
70 |
| intron |
3468 |
3848 |
381 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001362065 |
GA19724 [Drosophila pseudoobscura pseudoobscura] gb|EAL26645.2| GA19724 [Drosophila pseudoobscura pseudoobscura] |
1e-139 |
| InterPro |
IPR025258 |
Domain of unknown function DUF4206 |
|
| InterPro |
IPR004012 |
RUN |
|
| InterPro |
IPR011011 |
Zinc finger, FYVE/PHD-type |
|
| Pfam |
PF13901.1 |
Domain of unknown function (DUF4206) |
5.2e-62 |
| Pfam |
PF02759.14 |
RUN domain |
1.9e-17 |
| Pfam |
PF14446.1 |
Prokaryotic RING finger family 1 |
0.23 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC030686 |
| D. plexippus |
DPOGS204272PA |
| D. melanogaster |
FBgn0034694 |
| H. melpomene |
HMEL003317-PA |
| A. mellifera |
GB19290-PA |
| S. invicta |
SI2.2.0_09574 |
| P. vanderplanki |
Pv.12625 |
| N. vitripennis |
NV15471-PA |
| P. humanus |
PHUM397250-PA |
| B. mori |
BGIBMGA007542-TA |