MidgeBase gene description page [Pn.03263]
Outline
| Gene ID | Pn.03263 |
| Type | Protein coding gene |
| Scaffold | PnScaf2713 |
| Start | 22985 |
| End | 35946 |
| Direction | - |
Sequence
Transcript: 1077 (bp)
ATGCTCAGGGTTCTCATTCAGAATCATGGAAAAGTGCTGAAAACAATAAATGCTGCATCAGCAAACGACTCGAGCAAAGTGACATCGGTGGTTATTGAGGAGCTCGACGTCCTCGCAAAGCCCGAAGCAATTAGAAATTTGAAGATCGTCCGGACGACACAATATGAAAATCCAAAGGACGGCAATTACGACGATGGAAAATTGATTATAGTAACCGACAGTCAGATCCTCAGCATCCCGCTGCATCGGTGCAACAGCCAAAAGATTAACAGTTGCAGTGACTGCGTCGCACTGCAAGATCCCTACTGCGCGTGGGACAAAATCGCCGGCAAGTGTCTTTCGCATGGAGCGCCGCGTTGGATCGACGAGACGTACTTCTACTCGGAGGTGTCGACGGGTCAGCATTCCGCTTGTCCGTCGGGAAAGTCAAAGGACCCGAACGTCGAGTCCAAAGGCTATCGTGACGACTTTGACATGCGAATGGGTAAGGACGGCGAGCTGAGTGGCACGATGCAAGACAAAAGCTTCGACGGCGTGAACGGACCGCAAATCCGAGCGGACGCCATGAATGCACAGTACACTGTCGAAACGGTCGTCATGGCAGTGCTGGCCGCCGCCATCTTCGCTCTCCTCGTTGGCTTTATTACCGGCTACTTCTGCGGCCGACGCTGCCACAAGGATGAGGATGACAACTTGCCCTATCCGGACACCGAGTACGAGTACTTCGAGCAGCGGTCGAACATCAACCGCCTGCAAACCGAGCCAAAGTTGCTGCCTCAAGTGGAGGAGGTGACATATGCTGAGCCCGTTCTGCTGCCTCAACCGCCCAACTCTAACAAAATGCACCAGCCGCCGATGGGTTCGCCCAAGAGCACCCTGCGGAAGCCCATGATGCCCCACCACCACGCTGGCGTCAATTCCGAGACTCTCTTCCAATTCCAACCGGACGGATACAATCCGCCGCGTGACATGAATTATCGCGGGCGTGACAACTTCGGCACACTGCGATCGCATCAGGGCGACAACTACCGACGTGACGGCTTCTCAACGACGAGAAGCGTCAAGAAGGTATACCTA
Protein: 359 (aa)
MLRVLIQNHGKVLKTINAASANDSSKVTSVVIEELDVLAKPEAIRNLKIVRTTQYENPKDGNYDDGKLIIVTDSQILSIPLHRCNSQKINSCSDCVALQDPYCAWDKIAGKCLSHGAPRWIDETYFYSEVSTGQHSACPSGKSKDPNVESKGYRDDFDMRMGKDGELSGTMQDKSFDGVNGPQIRADAMNAQYTVETVVMAVLAAAIFALLVGFITGYFCGRRCHKDEDDNLPYPDTEYEYFEQRSNINRLQTEPKLLPQVEEVTYAEPVLLPQPPNSNKMHQPPMGSPKSTLRKPMMPHHHAGVNSETLFQFQPDGYNPPRDMNYRGRDNFGTLRSHQGDNYRRDGFSTTRSVKKVYL
| Type | Start | End | Length |
| CDS |
22988 |
23128 |
141 |
| CDS |
23482 |
23668 |
187 |
| CDS |
23955 |
24219 |
265 |
| CDS |
25194 |
25399 |
206 |
| CDS |
25515 |
25626 |
112 |
| CDS |
34446 |
34589 |
144 |
| CDS |
35925 |
35946 |
22 |
| intron |
23129 |
23481 |
353 |
| intron |
23669 |
23954 |
286 |
| intron |
24220 |
25193 |
974 |
| intron |
25400 |
25514 |
115 |
| intron |
25627 |
34445 |
8819 |
| intron |
34590 |
35924 |
1335 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001661952 |
semaphorin [Aedes aegypti] gb|EAT46138.1| semaphorin [Aedes aegypti] |
1e-142 |
| InterPro |
IPR003659 |
Plexin/semaphorin/integrin |
|
| InterPro |
IPR002165 |
Plexin |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR016201 |
Plexin-like fold |
|
| InterPro |
IPR001627 |
Semaphorin/CD100 antigen |
|
| Gene Ontology(BP) |
GO:0007275 |
multicellular organismal development |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0004872 |
receptor activity |
|
| Pfam |
PF01403.14 |
Sema domain |
0.084 |
| Pfam |
PF01437.20 |
Plexin repeat |
4.1e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA004094-TA |
| H. melpomene |
HMEL007946-PA |