MidgeBase gene description page [Pn.03255]
Outline
| Gene ID | Pn.03255 |
| Type | Protein coding gene |
| Scaffold | PnScaf2712 |
| Start | 40591 |
| End | 41262 |
| Direction | + |
Sequence
Transcript: 612 (bp)
ATGGAAGAAATAATTGCTTTTCCTGGACAAAGAATCTGCTTAGCAAACGAAAACACCATTGCTGGCACCGGAACATACGAGAGATTAGGCTACATCTATTCATCGCTTGCAGGAATCGTAGAATCGAACGAAGAAGGCCAGAATAAAATAATCAGCGTTCGAGCGTCGGGTCAAAAGACAGTCCTCCCAGTCGTCGGCGATGTTGTAACAGCTCGCGTCGAAATTGTCAACCAGCGATTTGCAAAATGTCAAATTCTGTGCATAAACGACACTTTGCTGAAGCGACCGCTTCGAGGAATCCTTCGCAAAGAGGACGTTCGTGCAACTGACATAGACAGAGTGGAGATGTACAAAAACTACCGGCCAAACGACATCATTCTCGCCAAAGTAATTCCCCAAATTGAACTGCACACATACAGCTTGTCAACTGCCGAAAACGAGCTGGGCGTCGTAGTAGCCTTTCCACGCGGACTCACAAACTCAACGGGCGACAATCATGGAAATCCAATGATTCCAGTGAGCTGGGTGTCGATGAAATGTGCAGTAACTGGAATAGAAGAACCGCGAAAAGTAGCAAAAATAATGTCGGAAGACTCGCTAGTGAGAACAGAA
Protein: 204 (aa)
MEEIIAFPGQRICLANENTIAGTGTYERLGYIYSSLAGIVESNEEGQNKIISVRASGQKTVLPVVGDVVTARVEIVNQRFAKCQILCINDTLLKRPLRGILRKEDVRATDIDRVEMYKNYRPNDIILAKVIPQIELHTYSLSTAENELGVVVAFPRGLTNSTGDNHGNPMIPVSWVSMKCAVTGIEEPRKVAKIMSEDSLVRTE
| Type | Start | End | Length |
| CDS |
40591 |
40731 |
141 |
| CDS |
40789 |
41259 |
471 |
| intron |
40732 |
40788 |
57 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001844743 |
exosomal 3'-5' exoribonuclease complex subunit ski4 [Culex quinquefasciatus] gb|EDS38203.1| exosomal 3'-5' exoribonuclease complex subunit ski4 [Culex quinquefasciatus] |
1e-60 |
| InterPro |
IPR025721 |
Exosome complex component, N-terminal domain |
|
| InterPro |
IPR019495 |
Exosome complex, component CSL4 |
|
| Pfam |
PF14382.1 |
Exosome complex exonuclease RRP4 N-terminal region |
5.8e-13 |
| Pfam |
PF10447.4 |
Exosome component EXOSC1/CSL4 |
6.4e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000034321 |
| S. invicta |
SI2.2.0_14459 |
| A. mellifera |
GB16270-PA |
| D. plexippus |
DPOGS204797PA |
| H. sapiens |
ENSP00000359939 |
| B. mori |
BGIBMGA010827-TA |
| H. melpomene |
HMEL013183-PA |
| A. gambiae |
AGAP008063 |
| C. quinquefasciatus |
CPIJ003155 |
| P. humanus |
PHUM333920-PA |
| N. vitripennis |
NV10721-PA |
| A. aegypti |
AAEL001619 |
| T. castaneum |
TC015397 |
| P. vanderplanki |
Pv.09834 |
| D. melanogaster |
FBgn0032346 |