MidgeBase gene description page [Pn.03253]
Outline
| Gene ID | Pn.03253 |
| Type | Protein coding gene |
| Scaffold | PnScaf2712 |
| Start | 34220 |
| End | 38273 |
| Direction | - |
Sequence
Transcript: 3072 (bp)
ATGAAGAACTTGTTGACTGTAATTTTTTGTCTACTCATCGGAGTTTCGGCTGCATTCCGTAGCCGCGGCAGCAATCTAATGAGTGGTAGCACTAGTCAATCATCAAATCAATTAAATATCGGACTGGTCGCTCCGCACACCAATTTCGGCAAGCGAGAGTACTTGCGAGCAATTAACTCAGCTGTGACCGGGCTGTCAAAGGCGCGCGGCCAAAAGCTGACGTTCCTGAAGGATTACGAGTTCAACCCGGGCAACATTCACTTCGAGTCGCTCACGTTGAACCCAAGCCCGACCGCAATTCTGACGATTTTGTGCAAGCAATTTCTGCACGCAAACGTCTCGGCAATTCTTTACATGATGAACTACGAGCAGTATGGCAGATCGACAGCCAGCGCTCAATACTTTCTCCAGCTTGCCGGCTATCTGGGCATTCCCGTGATCAGTTGGAACGCCGACAATAGCGGTCTGGAGCGAAGAGCGTCGCAGTCGACTCTGCAGCTCCAACTGGCGCCTTCGATCGAGCACCAAGCGGCGGCCATGCTTTCGATTCTCGAGCGCTATAAATGGCATCAGTTCAGCATCGTCACATCGCAAATTGCCGGTCACGACGACTTCGTTCAGGCCGTACGTGAGCACGTCGCAGACATGCAGGATCGGTTTAAGTTCACAATCCTCAACTCAATTATCGTGACTCGCCCGAGTGATTTGACTGACTTGATAAACAGCGAGGCTCGTGTGATGCTGCTTTACTGCACGAAAAGCGAAGCCATCGACATCCTAAAAGCTGCCGAGACTCATCACTTGACTGGCGAGAATTATGTTTGGGTCGTGACACAGTCGGTCATCGAGAATACTCAGCCTCATTCGAGCTATCCCGTCGGCATGTTGGGCGTTCATTACGATACGAGCTCGGGCTCGCTGGTGAACGAAATCACGACAGCGATAAAAGTGTATGCGTCCGGCGTGGAAAATTATCTCAACGATGTTCACAACCGGGGCAGGAAGTTGAACACTCACGGACTTTCGTGCGAGGACGAGGGACGCGGTCGATGGGATAACGGCGAAATATTTTATCGCTACTTACGCAACGTATCGATTGAGGGCAGCGACACGAACAAGCCGAATGTGGAGTTCAACGCCGACGGCGATCTGAAGTATGCCGAGCTGAAAATCATGAATCTCCGGCCGAGCGTGACGTCGAAGGGAATTGTGTGGGAGGAGATTGGCGTGTGGAAGTCGTGGCAGACAAATGCACAGCAACGACTCGACATCCGCGACATTTACTGGCCGGGCAATTCGCACGCACCACCGCAGGGCGTGCCCGAGAAGTTCCACCTGAAGATCACGTTCCTGGAGGAGGCGCCCTACATCAACCTCTCGCCGCCCGATCCCATCTCGGGCAAGTGTTTGATGGATCGCGGCGTGATTTGCCGCGTCGCGCCCGACACAGACGTCGTCGACATCGACCAGGCGCACAAGAACGGTAGCTACTTCCAGTGCTGCAGCGGCTTCTGCATCGACCTGCTCGAGAAGTTCGCCGAGGAACTCGGATTCACTTACGAGCTGGTGCGCGTCGAGGACGGCAAGTGGGGAGTCCTCGACAACGGCAAGTGGAACGGACTCATCGCCGAGCTGGTCAACCGTAAGACCGACATGGTGCTGACGTCGCTCATGATCAACGCGGAGCGCGAGTCGGTCGTCGACTTCAGCGAGCCGTTCATGGAGACGGGCATAGCCATCGTGGTGGCCAAGAGGACCGGCATCATCTCGCCTACTGCGTTCCTGGAGCCGTTCGACACCGCCAGCTGGATGCTGGTCGGCGTGGTCGCCATCCAGGCAGCGACCTTTATGATCTTCCTCTTCGAGTTTCTGTCGCCGAGCGGGTTCGACATGAAGCTCGCCATTCCTCAGCAGGCGCCCGGCAATAATGGCGTGCTGCCCTATCGCTTCTCCCTCTTCCGCACTTACTGGCTGGTGTGGGCCGTTCTCTTCCAGGCGGCCGTTCACGTGGACTCGCCGCGCGGCTTCACGGCTCGCTTCATGACCAACGTGTGGGCGATGTTTGCCGTGGTTTTCCTTGCCATCTACACTGCCAACCTCGCCGCCTTCATGATCACGCGCGAGGAGTTCCACGAGTTCTCGGGACTGGATGACACTCGACTGTCGCGTCCCTTCTCGCACAAGCCACCAATCAAGTTTGGAACGATACCATGGAGTCACTCGGATTCAACAATTGCCAAGTACTTCAAGGAGATGCACTACTACATGCGGAAATTCAATAAAACATCTGTCTCGGAAGGAGTCTCCTCGGTTTTGAGTGGAACACTTGATGCTTTTATTTACGATGGCACGGTCTTGGATTATCTGGTGCAACAAGACGAAGATTGTCGCCTGTTGACTGTCGGCCAGTGGTACGCCATGACGGGTTATGGCCTCGCTTTCTCGAGAAACTCAAAGTACGTGAACATGTTCAACAAGCGACTGCTCGAGTACAGAGCCAACGGTGATTTGGAGCGATTGAGGAGATTTTGGATGACGGGTACGTGCCGCTATGGAAAGCAAGAGCACAAGTCGTCCGATCCTTTGGCACTGGAGCAGTTCTTGTCGGCGTTTCTCCTGCTGATGGCTGGGATTTTGTTGGCTGCTCTTCTTCTTCTCCTGGAGCATCTCTACTTCAAGTATTTCAGGGCGAGTCTTGCGAAATCGGATCGTGGCGGTTGCTGCGCGCTGATTTCGCTGTCGATGGGCAAGAGCTTGACATTTAGAGGCGCCGTTTACGAGACAACTGAGTTGATCAGAAACCATCGCTGTAAGGATGTAATTTGCGACACCCATTTGTGGAAGGTCAAGCACGAATTGGACATTTCTCGGCTGCGCGTGAGACAACTCGAAAAGACGATGGACAATTATGGAATCAAGCCGCCTCAAGTCAAACTGGCATCGATGTCGAACCTCATAAGCGAAAGACATGATAAGCCGCATGTGCTGGGCAACTTGAGTTTGGGCGGAAGTGCACAGGATCTCTACCGATGGACTTACAAGACGGAAATTGCTGAAATGGAAACTGTTTTG
Protein: 1024 (aa)
MKNLLTVIFCLLIGVSAAFRSRGSNLMSGSTSQSSNQLNIGLVAPHTNFGKREYLRAINSAVTGLSKARGQKLTFLKDYEFNPGNIHFESLTLNPSPTAILTILCKQFLHANVSAILYMMNYEQYGRSTASAQYFLQLAGYLGIPVISWNADNSGLERRASQSTLQLQLAPSIEHQAAAMLSILERYKWHQFSIVTSQIAGHDDFVQAVREHVADMQDRFKFTILNSIIVTRPSDLTDLINSEARVMLLYCTKSEAIDILKAAETHHLTGENYVWVVTQSVIENTQPHSSYPVGMLGVHYDTSSGSLVNEITTAIKVYASGVENYLNDVHNRGRKLNTHGLSCEDEGRGRWDNGEIFYRYLRNVSIEGSDTNKPNVEFNADGDLKYAELKIMNLRPSVTSKGIVWEEIGVWKSWQTNAQQRLDIRDIYWPGNSHAPPQGVPEKFHLKITFLEEAPYINLSPPDPISGKCLMDRGVICRVAPDTDVVDIDQAHKNGSYFQCCSGFCIDLLEKFAEELGFTYELVRVEDGKWGVLDNGKWNGLIAELVNRKTDMVLTSLMINAERESVVDFSEPFMETGIAIVVAKRTGIISPTAFLEPFDTASWMLVGVVAIQAATFMIFLFEFLSPSGFDMKLAIPQQAPGNNGVLPYRFSLFRTYWLVWAVLFQAAVHVDSPRGFTARFMTNVWAMFAVVFLAIYTANLAAFMITREEFHEFSGLDDTRLSRPFSHKPPIKFGTIPWSHSDSTIAKYFKEMHYYMRKFNKTSVSEGVSSVLSGTLDAFIYDGTVLDYLVQQDEDCRLLTVGQWYAMTGYGLAFSRNSKYVNMFNKRLLEYRANGDLERLRRFWMTGTCRYGKQEHKSSDPLALEQFLSAFLLLMAGILLAALLLLLEHLYFKYFRASLAKSDRGGCCALISLSMGKSLTFRGAVYETTELIRNHRCKDVICDTHLWKVKHELDISRLRVRQLEKTMDNYGIKPPQVKLASMSNLISERHDKPHVLGNLSLGGSAQDLYRWTYKTEIAEMETVL
| Type | Start | End | Length |
| CDS |
34223 |
34361 |
139 |
| CDS |
34417 |
34705 |
289 |
| CDS |
34770 |
35095 |
326 |
| CDS |
35231 |
36481 |
1251 |
| CDS |
36555 |
36745 |
191 |
| CDS |
37060 |
37151 |
92 |
| CDS |
37228 |
37863 |
636 |
| CDS |
38126 |
38273 |
148 |
| intron |
34362 |
34416 |
55 |
| intron |
34706 |
34769 |
64 |
| intron |
35096 |
35230 |
135 |
| intron |
36482 |
36554 |
73 |
| intron |
36746 |
37059 |
314 |
| intron |
37152 |
37227 |
76 |
| intron |
37864 |
38125 |
262 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653086 |
glutamate receptor, ionotropic, n-methyl d-aspartate epsilon (nmda epsilon) [Aedes aegypti] gb|EAT40152.1| glutamate receptor, ionotropic, n-methyl d-aspartate epsilon (nmda epsilon) [Aedes aegypti] |
0.0 |
| InterPro |
IPR001638 |
Extracellular solute-binding protein, family 3 |
|
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| InterPro |
IPR001828 |
Extracellular ligand-binding receptor |
|
| InterPro |
IPR001508 |
NMDA receptor |
|
| InterPro |
IPR019594 |
Glutamate receptor, L-glutamate/glycine-binding |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(BP) |
GO:0006811 |
ion transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0030288 |
outer membrane-bounded periplasmic space |
|
| Gene Ontology(MF) |
GO:0005216 |
ion channel activity |
|
| Gene Ontology(MF) |
GO:0004872 |
receptor activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0005215 |
transporter activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
1e-61 |
| Pfam |
PF10613.4 |
Ligated ion channel L-glutamate- and glycine-binding site |
1.7e-17 |
| Pfam |
PF01094.23 |
Receptor family ligand binding region |
7.1e-23 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
3.8e-27 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL006650-PA |
| H. melpomene |
HMEL009738-PA |
| A. gambiae |
AGAP012429 |
| H. sapiens |
ENSP00000441572 |
| H. sapiens |
ENSP00000332549 |
| H. sapiens |
ENSP00000385872 |
| H. sapiens |
ENSP00000263269 |
| M. musculus |
ENSMUSG00000002771 |
| P. humanus |
PHUM390530-PA |
| C. quinquefasciatus |
CPIJ013901 |
| D. melanogaster |
FBgn0053513 |
| H. sapiens |
ENSP00000279593 |
| B. mori |
BGIBMGA011691-TA |
| D. plexippus |
DPOGS213629PA |
| H. sapiens |
ENSP00000338645 |
| P. vanderplanki |
Pv.09836 |
| A. mellifera |
GB15722-PA |
| M. musculus |
ENSMUSG00000059003 |
| T. castaneum |
TC003802 |
| H. sapiens |
ENSP00000379818 |
| M. musculus |
ENSMUSG00000020734 |
| A. aegypti |
AAEL013695 |
| A. aegypti |
AAEL008090 |
| H. sapiens |
ENSP00000293190 |
| H. sapiens |
ENSP00000454998 |
| S. invicta |
SI2.2.0_02864 |
| N. vitripennis |
NV15696-PA |
| M. musculus |
ENSMUSG00000030209 |
| H. sapiens |
ENSP00000379820 |