MidgeBase gene description page [Pn.03252]
Outline
| Gene ID | Pn.03252 |
| Type | Protein coding gene |
| Scaffold | PnScaf2712 |
| Start | 28035 |
| End | 32703 |
| Direction | + |
Sequence
Transcript: 1977 (bp)
ATGGCAAATTTGAGCAAATTGACGCAGAGAAATGAGTTTATTTGTGCGGCTGGAGTTGCAGCAGCGGGCTTATTGCTGGCAATTAGCAAATATTCAAGAGAACAAAGGCGCAAAAACCTGCGACCGGAGGACAAGATCGAATATTTCATCAACGAGAAGAAGGACACAAAGCGAGTGAAGGCGCACGTGAATGCGCGATTCTTCAAACAGCTGAAATTCCTGCTCGGAATTTTGGTGCCGAAAAAGCTGAGCGCCGAATCCGCACTGCTCGTTGCAATCGCCGCGTCTCTCATTCTCCGGTCCGTCAGCGACATTTGGATGATCCAAAATGCGACAGTCATCGAGAGCTCAATCATCACCATGAACCATCCAAAGTTCCGCACGTCGCTATGGAAATTTTTGGCCGCAATGCCAGCTATTGCTGTCGTTAATAATGTGCTCAAGTGGAGCATTGGCGAGCTGAAAATTCGCTTCCGAACCAATTTATCGAAATATCTGTTCGATCAATACCTGAAGGGATACACATACTACAAGATGTCTAATCTGGATAATCGCATTGCCAACGCCGACCAACTGCTCACCACCGACATCGACAAGTTCTGCGAGTCGACCGTGGACTTGTACTCCAACACCTGCAAGCCCTTGCTGGACGTTTTCATCTACATTTACCGCACCACGTCGACGATTGGCGCTAAAACTCCTCTAATTATCATGATGTACCTGCTCTTCTCTGGCGTCGTTCTGACTCACCTGCGTCGACCGACCGGCAATCTGACGATTCAGGAGCAAAAACTCGAGGGCGAATATCGATATGTCAACAGCCGGCTCATAACAAACTCAGAAGAAGTGGCCTTCTATCAAGGAAACACTCGCGAGAAACTCACGATACTTGCCAGTTTTAATAAGCTCACGGCTCACTTGAGGAAGTTCTTGGAATTCCGAGTCGGCATGGGCGTAGTCGATAACTTGGTCGCAAAATATATCGCCACGGGTGTCGGCTTCTACGCGGTCTCGCTTCCATTCTTCGACACGAGCAACACACTACTGCAGGACAACAACGACGGCGAGCGCTTGCGACACTACTACACCTTCGGCCGCATGCTGGTGAAGCTCGCGGAGGCCATCGGCCGTTTGGTGTTGGCGGGTCGCGAGATGTCGCGACTAGCCGGCTTCACAACGCGCATGGACGAGCTGATCAAGGTGCTGACGGAGCTGAACGACGGCAAGTACGAGCGCACGATGGTGAGCAACTCGTCGAGTGCCGACATGGACATCGGCGTGGGCAAGGGCATCATCTCCTTCCAGGACAACATCATTCGCTTCGAGCAGGTGCCTCTCGTCACGCCCAACGGCGACATCCTCGTGAAGGAGCTGACGTTCGAGGTGCAGTCGGGCACGAATGTGCTGGTGTGCGGCCCGAACGGGTGCGGCAAGTCGAGCCTGTTCCGCATACTCGGCGAGCTGTGGCCGACGTGGGGCGGCAAGGTGGTGAAGCCGCCGCGCGGAAAGCTCTTCTACATCCCCCAGCGGCCGTACATGACGCTCGGCACGCTGCGCGATCAAATCATCTATCCGCACACGTTCGAAGAGATGAAGCGGCGCGGCAAGACCGACAAGGACCTGGCCAAGTTCCTGGACATTGTGCAACTGCGGCCACTGGTGCAGCAGCGCGAGAAGGGCCTCGACTCCATCGAGGACTGGATCGACGTGCTGAGCGGCGGTGAGAAGCAGCGCGTGGCGATGGCGCGTCTCTTCTACCACCATCCGCAGTTCGCCATCCTCGACGAGTGCACCAGCGCCGTCTCGGTGGACGTGGAGGGAAGCATGTACGAGTACTGTCGTCAGGTGGGCATCACGCTCTTCACCGTGTCGCACCGAAAGTCGCTGTGGACACACCACGAGTACTTCCTGCGCTTCGACGGACGCGGCGCATACGAGTTCGGAAAGATTGACGGATCGAACGAGGAATTCGGGTCG
Protein: 659 (aa)
MANLSKLTQRNEFICAAGVAAAGLLLAISKYSREQRRKNLRPEDKIEYFINEKKDTKRVKAHVNARFFKQLKFLLGILVPKKLSAESALLVAIAASLILRSVSDIWMIQNATVIESSIITMNHPKFRTSLWKFLAAMPAIAVVNNVLKWSIGELKIRFRTNLSKYLFDQYLKGYTYYKMSNLDNRIANADQLLTTDIDKFCESTVDLYSNTCKPLLDVFIYIYRTTSTIGAKTPLIIMMYLLFSGVVLTHLRRPTGNLTIQEQKLEGEYRYVNSRLITNSEEVAFYQGNTREKLTILASFNKLTAHLRKFLEFRVGMGVVDNLVAKYIATGVGFYAVSLPFFDTSNTLLQDNNDGERLRHYYTFGRMLVKLAEAIGRLVLAGREMSRLAGFTTRMDELIKVLTELNDGKYERTMVSNSSSADMDIGVGKGIISFQDNIIRFEQVPLVTPNGDILVKELTFEVQSGTNVLVCGPNGCGKSSLFRILGELWPTWGGKVVKPPRGKLFYIPQRPYMTLGTLRDQIIYPHTFEEMKRRGKTDKDLAKFLDIVQLRPLVQQREKGLDSIEDWIDVLSGGEKQRVAMARLFYHHPQFAILDECTSAVSVDVEGSMYEYCRQVGITLFTVSHRKSLWTHHEYFLRFDGRGAYEFGKIDGSNEEFGS
| Type | Start | End | Length |
| CDS |
28035 |
28141 |
107 |
| CDS |
29306 |
29424 |
119 |
| CDS |
30352 |
30542 |
191 |
| CDS |
30619 |
30716 |
98 |
| CDS |
30782 |
30983 |
202 |
| CDS |
31057 |
31164 |
108 |
| CDS |
31239 |
31392 |
154 |
| CDS |
31703 |
32700 |
998 |
| intron |
28142 |
29305 |
1164 |
| intron |
29425 |
30351 |
927 |
| intron |
30543 |
30618 |
76 |
| intron |
30717 |
30781 |
65 |
| intron |
30984 |
31056 |
73 |
| intron |
31165 |
31238 |
74 |
| intron |
31393 |
31702 |
310 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001662679 |
peroxisomal membrane protein 70 abcd3 [Aedes aegypti] gb|EAT45867.1| peroxisomal membrane protein 70 abcd3 [Aedes aegypti] |
0.0 |
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR010509 |
ABC transporter, N-terminal |
|
| InterPro |
IPR003439 |
ABC transporter-like |
|
| InterPro |
IPR017940 |
ABC transporter, integral membrane type 1 |
|
| InterPro |
IPR011527 |
ABC transporter, transmembrane domain, type 1 |
|
| InterPro |
IPR017871 |
ABC transporter, conserved site |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Gene Ontology(MF) |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
|
| Gene Ontology(MF) |
GO:0016887 |
ATPase activity |
|
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.0058 |
| Pfam |
PF12846.2 |
AAA-like domain |
0.027 |
| Pfam |
PF02463.14 |
RecF/RecN/SMC N terminal domain |
5 |
| Pfam |
PF00005.22 |
ABC transporter |
4.2e-10 |
| Pfam |
PF13476.1 |
AAA domain |
0.013 |
| Pfam |
PF06472.10 |
ABC transporter transmembrane region 2 |
1.4e-96 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
1.3e-05 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
0.081 |
| Pfam |
PF13304.1 |
AAA domain |
0.0041 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000403357 |
| P. vanderplanki |
Pv.09856 |
| T. castaneum |
TC012277 |
| A. mellifera |
GB16302-PA |
| H. sapiens |
ENSP00000359233 |
| N. vitripennis |
NV16903-PA |
| C. quinquefasciatus |
CPIJ016097 |
| A. gambiae |
AGAP000440 |
| D. melanogaster |
FBgn0031069 |
| D. plexippus |
DPOGS210049PA |
| B. mori |
BGIBMGA012688-TA |
| H. melpomene |
HMEL010424-PA |
| H. sapiens |
ENSP00000440692 |
| A. aegypti |
AAEL002913 |
| P. humanus |
PHUM308490-PA |
| M. musculus |
ENSMUSG00000028127 |
| S. invicta |
SI2.2.0_00242 |
| H. sapiens |
ENSP00000377780 |