MidgeBase gene description page [Pn.03237]
Outline
| Gene ID | Pn.03237 |
| Type | Protein coding gene |
| Scaffold | PnScaf2698 |
| Start | 32780 |
| End | 36185 |
| Direction | - |
Sequence
Transcript: 2649 (bp)
ATGTCGGTGGCGGCAGGTACAAGTTGGTATAGGTGCCCGTGCCGGCGGGTACAAGCTACTGGAAAAATGAGTGAAAATTCAAGCGTCAGCGGCAATGACCGGAAAAAAATTCGAGCTGATTCTCTGTCTCAAGACAGCGACACCAGAATGTCCGTACAGGAGGCCGATTCCTCCTATATTGGCCGAGGTCGAGGACGAGCTGGATCAAATTCAGACTCGTCTTCGTCGGGACAGCGCACACGTGCATCTGGCGGCGAAGGCTCAGCAAAATCAATTCTCGAGGAAGAAAGACAAGACGGACGAGCTCAATTACTCCGATTTCAAGACCCATATTTTACGCGTCCTTCTACGTTTGCATCAAGCTCGACGCCATTGGAAACGGGACGTATTTTTTCGGCCAACTATTTTCAAATCAGCCGCTCTCGTGACTTCCGATTCACTCAATATCGAGTGGATTTCCAACCCGAAGAAGATCAAAAGAACGTGCGACGATTTCTTATCGGCTCATGTAGAAGTGAATTGCGCGGATACGTTTATGATGGAGGAAACTTGATTTTCACCACTCGTCCGCTCCGATTGGATACTCTGAAATTGAAGCAAACGGATGCGAAAACAGGAAAAGACTATATTCTGACGTTCAGCAAGACTGGCGAAACCTCTATGACAGACGGTCGTGCATTACACGTTCTTAATTGTATACTGCGCAAAGCCATGCTGGGCTTGAACCTGAAGGAAATGAACCGAAATTTGTTCGATCCGGAGGCCAAAATAGATATGAAAGAATTTGATTTGACTATCTGGCCAGGATACAGCACATCTATTCGTCAGCACGAAACCGAGATTCTGGTAAACTGTGAAATCATGCACAAAGTTATGCGCAAGGAGAGAGCACTTGGCGTCTTAAAGAACCTCATGAAAAATAACCGAGACTTTCAAACGGAGGCCAAGAAAGAAATGATCGGAGCCATTGTTCTTACGCCATACAATAACAAAACCTATCGCGTCGATGACATTTTATTCGATAAATCACCGAGAGACTCGTTTGAGCGAAACGGCCAGAAAGTGTCATACGCAAACTATTACAAAGAGCGCTACAACATCACGATTCAAGACGTCCAGCAACCACTTTTGGTTTCCAACCCTAAAGCTCGTGATGTGCGTAGTGGCCAAGCGGGTCCTTGTGTTTTGATTCCCGAGCTTTGCATCATGACGGGTCTTACTCGTCAAATGCGTGAAAATTTTTTTATGATGAAAGCGATGGGTGAGCACACTCGTCTCAATCCCCAGAATCGTGCACAGCGCCTGCTGGAGTACAGTCGTCGCATTAATCAGACAAAGGCGAGCAACGATGTGCTCGAGTCGTTTGGATTGGAAATGAGCCGAGAGCTGCGAACATTCGGCGGACGTGTCATTAACCAGGAAAAGATTCTGTTTGGCCGTGATCGCGTCCATCAGAACGACGACACTGCTGATTGGACCAACGCCATTCGTTCGAACACCATGTATCGTAGCATTCGTCTTGAGCGATGGGGTTACATCTATACCGCGCGAATGGAGAACGACGTCTTGGAGTTCATGAAGATTTTTAAGGAAGTAGCTCGAGGACAGGAATATCAATTTGCAGAACCGAAAATTATCAAACTTCGAGATGATCGAATCGGTACTTATTCGCAAGAGATAGAGAGCTTCTGCGCCAAGGACCCGAAATTCGTCCTGATCTTCGTTCCTAACATTGCAAGTGATCGGTATGCGACAATCAAAAAGATAACGTACGCTCGTCATGCGGTGCCTTCGCAAGTGGTCGTCCAGAGAACAATCCAACCGAAAAGACAAAACTGGGGTCCCGTCAAGACCATCGCTACCAAAATCTTGCTGCAGATAAATTGCAAGCTAGGCGGAGCACCATGGATGATTGGCATGCCAATGAAGGGTGTAATGGTTATTGGATTTGATGTTTCACATGACACGAACGACAAGTCAAAATCATTCGGAGCCTTCGTAGCATCCATGGATCTTCGTTCTTCAGTCAAATATTATTCCACTGCGGCTCCACATCGAACGGGAGAAGAGATCGCTACAAATATGAATACACACATGCAGAAAGCGCTAATCGCTTTCAAAAAGGAACACGGATGCCTTCCTGAGCGCATACTCTTCTATCGAGATGGCGTCGGCGATGGTCAGATTGAGTATGTGCACAAAAATGAGGTCACAAAGATACAGGATGTGATCAAGACCTACTATAAGGACACTCAGCCGAAATTCGCATTCATCGTGGTCTCAAAACGTATAAACACTCGAATTTTTGAGAAGAAAAGAGGCTGCTATGAAAACCCGGTTTCGGGCACGGTCATCGACCGCGAAATAACTCTGCCTTACCGCTACGAATTCTTCCTGATTTCGCAAAGTGTTCGTCAAGGAACCGTGTCGCCGACAAATTACAACATTATCTACGACGAATTTGGATTATCACCAGAGAGACTCCAACAGATGACTTACAAGATGTGCCACTTGTATTACAATTGGTCCGGAACTACTCGCGTACCTGCTGTCGTTCAGTACGCGCACAAGCTATCGATTCTGCTAGGACAGTTTATGCACCAGCTGCCAAACGATTCGCAAGAGCTCAGCGAACGACTGTACTATTTG
Protein: 883 (aa)
MSVAAGTSWYRCPCRRVQATGKMSENSSVSGNDRKKIRADSLSQDSDTRMSVQEADSSYIGRGRGRAGSNSDSSSSGQRTRASGGEGSAKSILEEERQDGRAQLLRFQDPYFTRPSTFASSSTPLETGRIFSANYFQISRSRDFRFTQYRVDFQPEEDQKNVRRFLIGSCRSELRGYVYDGGNLIFTTRPLRLDTLKLKQTDAKTGKDYILTFSKTGETSMTDGRALHVLNCILRKAMLGLNLKEMNRNLFDPEAKIDMKEFDLTIWPGYSTSIRQHETEILVNCEIMHKVMRKERALGVLKNLMKNNRDFQTEAKKEMIGAIVLTPYNNKTYRVDDILFDKSPRDSFERNGQKVSYANYYKERYNITIQDVQQPLLVSNPKARDVRSGQAGPCVLIPELCIMTGLTRQMRENFFMMKAMGEHTRLNPQNRAQRLLEYSRRINQTKASNDVLESFGLEMSRELRTFGGRVINQEKILFGRDRVHQNDDTADWTNAIRSNTMYRSIRLERWGYIYTARMENDVLEFMKIFKEVARGQEYQFAEPKIIKLRDDRIGTYSQEIESFCAKDPKFVLIFVPNIASDRYATIKKITYARHAVPSQVVVQRTIQPKRQNWGPVKTIATKILLQINCKLGGAPWMIGMPMKGVMVIGFDVSHDTNDKSKSFGAFVASMDLRSSVKYYSTAAPHRTGEEIATNMNTHMQKALIAFKKEHGCLPERILFYRDGVGDGQIEYVHKNEVTKIQDVIKTYYKDTQPKFAFIVVSKRINTRIFEKKRGCYENPVSGTVIDREITLPYRYEFFLISQSVRQGTVSPTNYNIIYDEFGLSPERLQQMTYKMCHLYYNWSGTTRVPAVVQYAHKLSILLGQFMHQLPNDSQELSERLYYL
| Type | Start | End | Length |
| CDS |
32783 |
34636 |
1854 |
| CDS |
34695 |
35434 |
740 |
| CDS |
36131 |
36185 |
55 |
| intron |
34637 |
34694 |
58 |
| intron |
35435 |
36130 |
696 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002051133 |
GJ14585 [Drosophila virilis] gb|EDW63288.1| GJ14585 [Drosophila virilis] |
0.0 |
| InterPro |
IPR003165 |
Stem cell self-renewal protein Piwi |
|
| InterPro |
IPR003100 |
Argonaute/Dicer protein, PAZ |
|
| InterPro |
IPR012337 |
Ribonuclease H-like domain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF04221.7 |
RelB antitoxin |
0.09 |
| Pfam |
PF02170.17 |
PAZ domain |
4.8e-33 |
| Pfam |
PF02171.12 |
Piwi domain |
3.5e-88 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.14350 |
| Pn.08753 |
| Pn.10293 |
| Pn.11372 |
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL007698 |
| H. sapiens |
ENSP00000428267 |
| D. melanogaster |
FBgn0000146 |
| D. melanogaster |
FBgn0004872 |
| B. mori |
BGIBMGA009037-TA |
| H. sapiens |
ENSP00000435718 |
| H. sapiens |
ENSP00000406956 |
| A. gambiae |
AGAP009509 |
| M. musculus |
ENSMUSG00000029423 |
| H. sapiens |
ENSP00000413838 |
| H. melpomene |
HMEL007215-PA |
| A. aegypti |
AAEL006287 |
| C. quinquefasciatus |
CPIJ801857 |
| A. gambiae |
AGAP011204 |
| H. sapiens |
ENSP00000245255 |
| T. castaneum |
TC008711 |
| N. vitripennis |
NV12181-PA |
| N. vitripennis |
NV10813-PA |
| C. quinquefasciatus |
CPIJ005275 |
| C. quinquefasciatus |
CPIJ012516 |
| B. mori |
BGIBMGA010644-TA |
| H. melpomene |
HMEL008054-PA |
| P. vanderplanki |
Pv.03250 |
| M. musculus |
ENSMUSG00000033644 |
| H. sapiens |
ENSP00000444575 |
| N. vitripennis |
NV12150-PA |
| A. aegypti |
AAEL013227 |
| A. aegypti |
AAEL007823 |
| D. melanogaster |
FBgn0250816 |
| P. vanderplanki |
Pv.02417 |
| P. humanus |
PHUM411830-PA |
| C. quinquefasciatus |
CPIJ017382 |
| D. plexippus |
DPOGS208462PA |
| A. aegypti |
AAEL008076 |
| A. gambiae |
AGAP008862 |
| M. musculus |
ENSMUSG00000036912 |
| A. aegypti |
AAEL013233 |
| A. aegypti |
AAEL008098 |
| C. quinquefasciatus |
CPIJ801831 |
| H. sapiens |
ENSP00000431843 |
| P. vanderplanki |
Pv.05751 |
| P. vanderplanki |
Pv.04696 |
| H. sapiens |
ENSP00000330031 |
| S. invicta |
SI2.2.0_11484 |
| C. quinquefasciatus |
CPIJ017381 |
| C. quinquefasciatus |
CPIJ801832 |
| A. mellifera |
GB19389-PA |
| D. plexippus |
DPOGS208430PA |
| A. aegypti |
AAEL013692 |
| S. invicta |
SI2.2.0_05378 |
| H. sapiens |
ENSP00000349208 |
| P. humanus |
PHUM563960-PA |
| N. vitripennis |
NV16500-PA |
| A. mellifera |
GB10293-PA |
| H. sapiens |
ENSP00000299001 |
| T. castaneum |
TC008511 |