MidgeBase gene description page [Pn.03227]
Outline
| Gene ID | Pn.03227 |
| Type | Protein coding gene |
| Scaffold | PnScaf2698 |
| Start | 10459 |
| End | 13685 |
| Direction | + |
Sequence
Transcript: 1875 (bp)
ATGTTTCAAGGAAGAAGAGGCGGTGGTAAATTCAGAGGAGGCAATCGAAACTCTGGAGATCGCTTTCAAGATGATCAAGACAATCGCTCAAATTCAAATTTCAACAAAACAGGCCGCCGTGTAAGCTTCAAAACGTCACATCATCGGCACAACAAGAATTTAAGCGATGTGAAGATCAGGGCGATTCTAGAAGATGAGGATATGAGCGGTGATTTGGGACAAAATACATCGACTGAGATGATGAGCAAAAGACGTGGAAAATTCCGCAACATGCGCAAGGGTTCTCCAATCCCAAGAGGAATTGGTGGCGGCGGAAAGTTAATGATGCATCCTGCTGGATGGTACTTAGTCACAATAAATTTCGGATGCAAATACGACAAAGACGTCATTCTGAAGCTCTTGATGAACGCAGTTATGCCATCAATGTTGAATGCACACTACTACAAAAACGACACCGATAACAATTCCGCGCAATTCTTCGTTGATGATTACGATGTTGCCGAGAAACTATTACGTCAAGACAAGAAGATCGAGCTCCCAGACAGATATCGCATGCAAATCAAAGTGAGAGGAAGTCTGCCTCAAATTAAAATTGATCAGACTTTAAAGGAAAGAATGAAGCAAGTCATGGCAAAGAGATACAATTTGCAAACTAAAGCGTTGGACTTGAGCAAATTCCACGCTGATCCAGATTTGACTGATATTTTCTGTGCACTATTTCGTCAGCCCATTATGGCTGCGGCTATAGACATAATCGCCGAGAATATTCCTGACCTTGAAGCTATAAATCTCAACGATAATAAACTTAATATGATTGATCATATGAAAGTGTTGTCAACAAAACTACCGCATCTCAAAATAATATATCTTGCAAATAATAGGATTGTTATGTTAAGCTCTTTGGATGCTTTCAAGAGTTTGCCTATAGAAGAGTTGTTTTTGGAAGGGAACCCTTGTAAAAAACGTTTCAAGGACAACAGCCACTATGTCAGCGAAGTTAAGAAAAAGTTTCCGAAACTTGTAAAACTGGATGGAGTGGATCTAGGACCCGTCATAGGCTTCGATGTCGCAGACGATGCCAAGCCATTACCGCCATGGACACGCATATACTTCTGCAACACTTCTGGCCAAGAGATAGTCGCAAAGTTTATCGAGCAATACTATGCCATGTACGACTCTGATAATAGACAACAGTTACTGGAAGCCTACCACGAGCAAGCTATGCTTTCGATAACGGCGACCAATAATCAACACTATACTCAGGATGAGAAATTGTTTAATTACTACAAATTTGGGCGCAACCTGATGCATCCTAAAGGGTTCGAACACCGCTTCGCAAGCTTAAAACGAGGCAAACTGGTAGTAGTTGCACTGCTGAATGAATTACCTCCATCTAAGCACGACCCTCAATCCTTTGCTATTGATTTGACATTTTTCACGCCGCAAATGATCGTGCTGACTATTACGGGAATTTTCAAAGAGAGAAACAGCGATCCGAAGCTGGAGTTCGTAAGGACGTTTCAAAAAACGTTGACGATAGTTCCAAACAACGGGGGAATTTGCATCAGAAATGAATTGCTGCACATTAATAACGCGAGTCAAATTCAAGCGAAAAAGGCGTTCAATACAACGGCTCCAGCTCCCGTTCCCGTTCCCGCACCTTCAACTTCAATGCAACAGCCTGTGCAGTCAACAACGATTATCGACGATGCTACAAAATTCAAAATGATAGAAGAAATGTCGCGGCAGAGCAACATGAACTTTGAATGGAGCAAAAAATGTCTTGAGGAATCTAGTTGGGATTTTAATCGGGCCGCATTTGCTTTTCAAGAGCTCTTTAAGCAAAGTAAGATTCCACAAGAAGCTTTTGCAAAA
Protein: 625 (aa)
MFQGRRGGGKFRGGNRNSGDRFQDDQDNRSNSNFNKTGRRVSFKTSHHRHNKNLSDVKIRAILEDEDMSGDLGQNTSTEMMSKRRGKFRNMRKGSPIPRGIGGGGKLMMHPAGWYLVTINFGCKYDKDVILKLLMNAVMPSMLNAHYYKNDTDNNSAQFFVDDYDVAEKLLRQDKKIELPDRYRMQIKVRGSLPQIKIDQTLKERMKQVMAKRYNLQTKALDLSKFHADPDLTDIFCALFRQPIMAAAIDIIAENIPDLEAINLNDNKLNMIDHMKVLSTKLPHLKIIYLANNRIVMLSSLDAFKSLPIEELFLEGNPCKKRFKDNSHYVSEVKKKFPKLVKLDGVDLGPVIGFDVADDAKPLPPWTRIYFCNTSGQEIVAKFIEQYYAMYDSDNRQQLLEAYHEQAMLSITATNNQHYTQDEKLFNYYKFGRNLMHPKGFEHRFASLKRGKLVVVALLNELPPSKHDPQSFAIDLTFFTPQMIVLTITGIFKERNSDPKLEFVRTFQKTLTIVPNNGGICIRNELLHINNASQIQAKKAFNTTAPAPVPVPAPSTSMQQPVQSTTIIDDATKFKMIEEMSRQSNMNFEWSKKCLEESSWDFNRAAFAFQELFKQSKIPQEAFAK
| Type | Start | End | Length |
| CDS |
10459 |
10531 |
73 |
| CDS |
10595 |
10801 |
207 |
| CDS |
10859 |
11460 |
602 |
| CDS |
11520 |
11629 |
110 |
| CDS |
12588 |
12624 |
37 |
| CDS |
12686 |
12927 |
242 |
| CDS |
12991 |
13159 |
169 |
| CDS |
13248 |
13682 |
435 |
| intron |
10532 |
10594 |
63 |
| intron |
10802 |
10858 |
57 |
| intron |
11461 |
11519 |
59 |
| intron |
11630 |
12587 |
958 |
| intron |
12625 |
12685 |
61 |
| intron |
12928 |
12990 |
63 |
| intron |
13160 |
13247 |
88 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657723 |
hypothetical protein AaeL_AAEL001007 [Aedes aegypti] gb|EAT47918.1| conserved hypothetical protein [Aedes aegypti] |
1e-157 |
| InterPro |
IPR002075 |
Nuclear transport factor 2 |
|
| InterPro |
IPR015245 |
Nuclear RNA export factor Tap, RNA-binding domain |
|
| InterPro |
IPR005637 |
TAP C-terminal (TAP-C) domain |
|
| InterPro |
IPR018222 |
Nuclear transport factor 2, Eukaryote |
|
| InterPro |
IPR012677 |
Nucleotide-binding, alpha-beta plait |
|
| InterPro |
IPR009060 |
UBA-like |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(BP) |
GO:0006406 |
mRNA export from nucleus |
|
| Gene Ontology(BP) |
GO:0051028 |
mRNA transport |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
0.00043 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
0.00046 |
| Pfam |
PF09162.5 |
Tap, RNA-binding |
4.7e-11 |
| Pfam |
PF02136.15 |
Nuclear transport factor 2 (NTF2) domain |
2.4e-08 |
| Pfam |
PF02394.11 |
Interleukin-1 propeptide |
0.022 |
| Pfam |
PF03943.8 |
TAP C-terminal domain |
2e-20 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000263032 |
| B. mori |
BGIBMGA008447-TA |
| A. aegypti |
AAEL001007 |
| H. sapiens |
ENSP00000294172 |
| H. sapiens |
ENSP00000435742 |
| H. sapiens |
ENSP00000361844 |
| H. sapiens |
ENSP00000408864 |
| H. sapiens |
ENSP00000436679 |
| H. sapiens |
ENSP00000361889 |
| H. sapiens |
ENSP00000354539 |
| D. plexippus |
DPOGS208508PA |
| D. melanogaster |
FBgn0003321 |
| H. sapiens |
ENSP00000361838 |
| P. humanus |
PHUM221730-PA |
| T. castaneum |
TC005575 |
| H. sapiens |
ENSP00000361849 |
| M. musculus |
ENSMUSG00000010097 |
| H. sapiens |
ENSP00000378504 |
| M. musculus |
ENSMUSG00000031410 |
| H. sapiens |
ENSP00000396447 |
| S. invicta |
SI2.2.0_06310 |
| C. quinquefasciatus |
CPIJ001995 |
| H. sapiens |
ENSP00000442401 |
| A. gambiae |
AGAP002193 |
| H. sapiens |
ENSP00000355286 |
| H. sapiens |
ENSP00000361836 |
| H. sapiens |
ENSP00000361835 |
| H. sapiens |
ENSP00000331535 |
| H. sapiens |
ENSP00000331471 |
| H. melpomene |
HMEL011493-PA |
| N. vitripennis |
NV16573-PA |
| H. sapiens |
ENSP00000413087 |
| P. vanderplanki |
Pv.05165 |
| H. sapiens |
ENSP00000453885 |
| H. sapiens |
ENSP00000426978 |
| A. mellifera |
GB19026-PA |
| H. sapiens |
ENSP00000378523 |
| H. sapiens |
ENSP00000361843 |