MidgeBase gene description page [Pn.03201]
Outline
| Gene ID | Pn.03201 |
| Type | Protein coding gene |
| Scaffold | PnScaf2690 |
| Start | 28168 |
| End | 30853 |
| Direction | - |
Sequence
Transcript: 1839 (bp)
ATGCTGCTGTTAATTTCCTCTGTCACTTTAATATCGCTACTGGCATTATCGAAGTGCGGTCTCAGCGGTGCTCTAGATAACGGAATCGATGAGGGAATTGCGCATCCAAAATCGTCGCTGCGTAACGAAGAGCAGCACGCGCTACTAATGGAGCAGCGTGAAGAAGAGAATCAACAGGAAATTGCGAAGCTCAAGGCCGAAATAAAGAATCTCAAGCTAGAACTTTTTCAACTGAGAAATAATCCGATTTTATCAGACCAGCTGTTGTCACTCAATCCCAATGCTTCCACGACGCCGCTCCAACAGCAGCAGCAGCAGCAATCAGCGTCGTATCAATTAGACTGCACCAACTACATTCGCCGACAAGTGGGACAGGCGGAAATTCTGCACGGGCTGCCGATGAATAATGAATACGAGCTGATTCCGTTCAATCACTTCACATTCAGCCGCGTCTACCCGATAGACCTGGGCCTCGGCAAGCGCGTCGTCGAGAAGCCCATCGGCTACAAGCGCAAGGATCTGCTGGACGCGCTCAATCGGGCGCTCGACACGCTCAACAAGAATGCCACGCTGCCCGCTCAGCGCTACACACTCGACGACTTCATCGAAGGCATCTACCGAAATGAGCCGACAACTGGCACACAATATGAGCTCTATTTCCGTACGAAGGAAGTGAGCAATAAAACGGGCAGTCCCTCGCCGTCGTCGTCGTCGCATCACAATGATCATGGCACGACAAAAATTATCGTCATGAGACCGTTCGCGCCGCTGCAGACCATTCAAATTGAGCGATTTCCCAAAACGGCCGAGAAGGAAATCATTCACATAATTCTGCCGCTCGCCGGGCGCATCTCGACGTTTCAAGGCTTCATGGATAAGTTCGTTAAGATAGCCCTCAAAAATGACAGGCGCGTGCAGCTCACTGTCGTCTACTTCGGCGAGGACGGCCTGTCGGAGGCGCGACAAATCATGAAGCGCATCGTTGCCCAGAAAAGTGCTTACTCTTCCAATTTAAAATTATTAGCCTTAAACGAAACATTTTCGAGAGCTAAAGGACTTCGTGTTGGCGCCGAGCAGATATGGAATGAGGACAAGAGTCGAGGGAAGAATAATAAGGACGTGCTGCTCTTTATGTGCGATGTCGATATTGTATTTAGTGCAAAGTTCTTGGATAGATGTCGATGGAATACGAAACCTAATCGTAAAGTCTACTATCCTGTAGTGTTCAGTCTCTATAATCCACATGTCGTGTATACGCTGCAAGGTAAAGAATTGCCATCGGAAACAGACCAGCTTGTGATATCGAGAGACACTGGATTCTGGCGTGATTTTGGCTACGGAATGACGTGCCAATATCGATCTGACTTCCTCAAAGTACGTGGCTTCGACGAGGAGAGCGTCGGATGGGGCTACGAGGATGTGATGCTGTATCGTAAATACGTTAGGTCCAATATAAAAGTAATCAGAACCACAGATCCAGGAATCTTTCACATTTGGCATCCGAAGGTCTGTTCCGGTTCGCAAAATGGACAGAAGATGTCGGCCGACCAATATCGTGCGTGCATTCGCTCGCGCGCCCTCAACGAGGCGTCGCACCCGCAACTCGGCTTCCTCGCCTTCCACGACGAGCTCATGATGACCAGCAATCAGACTGAACTGAACCAGAATCCCAATAATAGCAACAGTACGAACAATAATAGCAGTAATGGTAGCAATAGCAGTAGTAATAGCGTTTACGAGCTGAGAAGCACGCGGAAGCATCCGGCGAGTGGCGGCCGGCAGTTGGCGAGAAACGCTCGCGCCAAAGTCCCATCCACGACAGCGACGCGGAAGGCCACA
Protein: 613 (aa)
MLLLISSVTLISLLALSKCGLSGALDNGIDEGIAHPKSSLRNEEQHALLMEQREEENQQEIAKLKAEIKNLKLELFQLRNNPILSDQLLSLNPNASTTPLQQQQQQQSASYQLDCTNYIRRQVGQAEILHGLPMNNEYELIPFNHFTFSRVYPIDLGLGKRVVEKPIGYKRKDLLDALNRALDTLNKNATLPAQRYTLDDFIEGIYRNEPTTGTQYELYFRTKEVSNKTGSPSPSSSSHHNDHGTTKIIVMRPFAPLQTIQIERFPKTAEKEIIHIILPLAGRISTFQGFMDKFVKIALKNDRRVQLTVVYFGEDGLSEARQIMKRIVAQKSAYSSNLKLLALNETFSRAKGLRVGAEQIWNEDKSRGKNNKDVLLFMCDVDIVFSAKFLDRCRWNTKPNRKVYYPVVFSLYNPHVVYTLQGKELPSETDQLVISRDTGFWRDFGYGMTCQYRSDFLKVRGFDEESVGWGYEDVMLYRKYVRSNIKVIRTTDPGIFHIWHPKVCSGSQNGQKMSADQYRACIRSRALNEASHPQLGFLAFHDELMMTSNQTELNQNPNNSNSTNNNSSNGSNSSSNSVYELRSTRKHPASGGRQLARNARAKVPSTTATRKAT
| Type | Start | End | Length |
| CDS |
28171 |
28503 |
333 |
| CDS |
28603 |
28705 |
103 |
| CDS |
28787 |
28983 |
197 |
| CDS |
29330 |
29487 |
158 |
| CDS |
29584 |
30393 |
810 |
| CDS |
30479 |
30622 |
144 |
| CDS |
30760 |
30853 |
94 |
| intron |
28504 |
28602 |
99 |
| intron |
28706 |
28786 |
81 |
| intron |
28984 |
29329 |
346 |
| intron |
29488 |
29583 |
96 |
| intron |
30394 |
30478 |
85 |
| intron |
30623 |
30759 |
137 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001869539 |
chondroitin beta-1,4-N-acetyl galactosaminyl transferase 1 [Culex quinquefasciatus] gb|EDS29615.1| chondroitin beta-1,4-N-acetyl galactosaminyl transferase 1 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR008428 |
Chondroitin N-acetylgalactosaminyltransferase |
|
| Gene Ontology(CC) |
GO:0032580 |
Golgi cisterna membrane |
|
| Gene Ontology(MF) |
GO:0016758 |
transferase activity, transferring hexosyl groups |
|
| Pfam |
PF02709.9 |
N-terminal domain of galactosyltransferase |
5.3e-10 |
| Pfam |
PF05679.11 |
Chondroitin N-acetylgalactosaminyltransferase |
7.7e-59 |
| Pfam |
PF04936.7 |
Protein of unknown function (DUF658) |
0.024 |
| Pfam |
PF10111.4 |
Glycosyltransferase like family 2 |
1.1e-08 |
| Pfam |
PF04977.10 |
Septum formation initiator |
0.035 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV50237-PA |
| T. castaneum |
TC011392 |
| H. sapiens |
ENSP00000363588 |
| H. sapiens |
ENSP00000381084 |
| P. humanus |
PHUM567440-PA |
| H. sapiens |
ENSP00000442155 |
| H. sapiens |
ENSP00000363590 |
| H. sapiens |
ENSP00000310891 |
| A. gambiae |
AGAP007720 |
| D. melanogaster |
FBgn0033500 |
| H. sapiens |
ENSP00000330805 |
| H. sapiens |
ENSP00000428216 |
| H. sapiens |
ENSP00000429809 |
| H. sapiens |
ENSP00000411816 |
| C. quinquefasciatus |
CPIJ019283 |
| A. aegypti |
AAEL013572 |
| M. musculus |
ENSMUSG00000042042 |
| P. vanderplanki |
Pv.03532 |
| M. musculus |
ENSMUSG00000036356 |