MidgeBase gene description page [Pn.03082]
Outline
| Gene ID | Pn.03082 |
| Type | Protein coding gene |
| Scaffold | PnScaf2629 |
| Start | 6290 |
| End | 7887 |
| Direction | + |
Sequence
Transcript: 1020 (bp)
ATGGCCGAGGTATTTTCCGACCAGAGCGAGTGGCACATAGCAAAGGGCCTCAATGAACAAAGTCTGCATCTTGAACTTGTGCAATGGGCTGATATTTTCATAATTTCGCCCATGGATGCAAACACGCTAGGCAAAATCAGCTCGGGCATATGTGATAATCTCTTAACTTGCATTGCCCGCGCTTGGGACCTTCATAAGCCCTTGCTATTCTGTCCCGAAATGAACACTAAGATGTTCCTGCATCCGATCACGAGCAAGCAGATCGAAGAATTAAAAATCTATGGGTACTACGAACTTCCTTCAATATCGGAGACCTTGCTAACCGACGCCAGCGGAGCAGGAGCCTTATCGGAGATTAACTATATCATTGACGCAATCTTCAATCATGTTCAACAACTTCAGCAGCAGCAAATGCATGCATCGGGAGATAACGATTCGCCGTATGAACACAAATATAATCATTTACAGCATAATCACGCGTCTCAGAGCAGCACACCGTCAGTGAGTCCGAACACTGTCGTTCAGCATTTGACAGGGTTCGTCCAAGTTAAGCAACGTGCGCAGACAGGCAATCAAGCAAATAAACCATTCACTTGTGACCTTTGTGGTGGAAAATTTTCTCGTTATTCAAGCCTTTGGTCTCACAAGACCCTTCATACCGGCATCAAGAAGTTCTCATGCAACATCTGTAATGCTAGCTTCGCAAAGGCTAACTACCTTAATAATCACAAGCGGACACATACTGGAGAAAGACCCTACAAGTGCACAACTTGCGGCCAATCGTTCTCGCAATCTACACACTTGAAGAATCATGAGAGAATCCACAGCGGAGAGAAACCATTTTCATGCGAAGTCTGCCACAAAGATTTCGCGAGATATTCAACACTCTGGAATCATCGACGAATCCACACAGGCGAGAAGCCATATAAATGCAGCTGGTGCAGTTCAGCATTTTCACAGGCGACTCATTTAAGGAAGCACGAAAAGGTTCACCTCGGAATTAAGAATTTTAAATGTGAG
Protein: 340 (aa)
MAEVFSDQSEWHIAKGLNEQSLHLELVQWADIFIISPMDANTLGKISSGICDNLLTCIARAWDLHKPLLFCPEMNTKMFLHPITSKQIEELKIYGYYELPSISETLLTDASGAGALSEINYIIDAIFNHVQQLQQQQMHASGDNDSPYEHKYNHLQHNHASQSSTPSVSPNTVVQHLTGFVQVKQRAQTGNQANKPFTCDLCGGKFSRYSSLWSHKTLHTGIKKFSCNICNASFAKANYLNNHKRTHTGERPYKCTTCGQSFSQSTHLKNHERIHSGEKPFSCEVCHKDFARYSTLWNHRRIHTGEKPYKCSWCSSAFSQATHLRKHEKVHLGIKNFKCE
| Type | Start | End | Length |
| CDS |
6290 |
6700 |
411 |
| CDS |
6865 |
7040 |
176 |
| CDS |
7098 |
7245 |
148 |
| CDS |
7366 |
7391 |
26 |
| CDS |
7467 |
7512 |
46 |
| CDS |
7573 |
7668 |
96 |
| CDS |
7768 |
7884 |
117 |
| intron |
6701 |
6864 |
164 |
| intron |
7041 |
7097 |
57 |
| intron |
7246 |
7365 |
120 |
| intron |
7392 |
7466 |
75 |
| intron |
7513 |
7572 |
60 |
| intron |
7669 |
7767 |
99 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663358 |
zinc finger protein [Aedes aegypti] gb|EAT34601.1| zinc finger protein [Aedes aegypti] |
4e-63 |
| InterPro |
IPR015880 |
Zinc finger, C2H2-like |
|
| InterPro |
IPR007087 |
Zinc finger, C2H2 |
|
| InterPro |
IPR003382 |
Flavoprotein |
|
| InterPro |
IPR013087 |
Zinc finger C2H2-type/integrase DNA-binding domain |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF09723.5 |
Zinc ribbon domain |
2.7 |
| Pfam |
PF05290.6 |
Baculovirus immediate-early protein (IE-0) |
0.0055 |
| Pfam |
PF00096.21 |
Zinc finger, C2H2 type |
3.9e-20 |
| Pfam |
PF08314.6 |
Secretory pathway protein Sec39 |
0.011 |
| Pfam |
PF07975.7 |
TFIIH C1-like domain |
0.046 |
| Pfam |
PF12874.2 |
Zinc-finger of C2H2 type |
0.00061 |
| Pfam |
PF05495.7 |
CHY zinc finger |
0.0013 |
| Pfam |
PF12171.3 |
Zinc-finger double-stranded RNA-binding |
2.3 |
| Pfam |
PF12907.2 |
Zinc-binding |
5 |
| Pfam |
PF13465.1 |
Zinc-finger double domain |
2.5e-30 |
| Pfam |
PF09237.6 |
GAGA factor |
0.54 |
| Pfam |
PF01722.13 |
BolA-like protein |
0.004 |
| Pfam |
PF13894.1 |
C2H2-type zinc finger |
1.4e-16 |
| Pfam |
PF13912.1 |
C2H2-type zinc finger |
9e-06 |
| Pfam |
PF13809.1 |
Tubulin like |
0.05 |
| Pfam |
PF04438.11 |
HIT zinc finger |
5.4 |
| Pfam |
PF05129.8 |
Transcription elongation factor Elf1 like |
0.16 |
| Pfam |
PF02441.14 |
Flavoprotein |
3.8e-24 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.08434 |