MidgeBase gene description page [Pn.03071]
Outline
| Gene ID | Pn.03071 |
| Type | Protein coding gene |
| Scaffold | PnScaf2623 |
| Start | 11677 |
| End | 15299 |
| Direction | - |
Sequence
Transcript: 2175 (bp)
ATGCCTGCCGTGGTGTCAAAGTTTCTGTCGAGCGCCGTCGACACTTATGAGCGTCGCGGCAAAAATGCTGAAGTCATCTCAAAGACTCTCCTCACAACAGCTGTTCTTGCCTATGTCGTGAAAATTTCCTATCCACATATCAGGCGTAAAATTAAAAGCAACGAGAAGCCTACTAGCAATGGCACTTGTGTAAACAACAACAATAACAATACGATTGAGAAATATGGCAAAGGAGGAAAGGGCAGCAGCAGCAGCGGAGGCAAGACTGAAGACGTAAAGGAGAAGAAATTGAGCCTCATCGAGAGAGCTCTGCGACAACCCGGACTGAACTTACAATTTGTGTTGCAATTGAGAAAACTTATTGAGATTATGATACCGAGCCTAATTTGCTACGAGACCGGTCTGCTGAGCGTTCACACAATGTGTCTGATATCGAGAACCTTTCTGAGCATCTACGTGGCCGCGATGGAGGGCGCCATTGTGAAGTACATCGTGCGGAAAGATGTCAAGAACTTCGTGTACATGCTTTTGAAATGGTTCGGAATTGCAATTCCGGCGACTTTCATTAACTCAATGATCCGATATTTAGAGAACAAATTGGCATTGGCTTTTCGAACGAGACTCGTCAATCACGCTTACAAGCAATATTTCACACACAATACATACTATAAAGTGTCGAATTTGGACGGCAGAATAGAAAACGCCGACCACCGGTTGACTGACGACATCACGACTTTCTCGAGCTCGATTGCGCACCTCTACTCTCACCTTACCAAGCCATGCTTTGACCTGATGCTCATCGGCCTAGCTCTAGCACAGTCCTCTTACAAAATGAAGGCGAACATCGTGAACGGCCCTCTGCTCGGATTCTTTGTCATCACGACTACGGCGCACATAATGCGCATCGTGTCGCCGCGCTTTGGTCAGCTGGTTTCAGAGGAGGCAAACCGAAACGGCTATCTGCGTCACATTCACTCGAGAATCATAACAAATGCCGAGGAAATTGCGTTCTACGGTGGCCACAAAGTTGAGCACATGCAGCTCAGTGAAGCATACCAACGCCTTTGCCGGCAAATGAATAAAATCTTTTCGCAGAAACTGTGGTTCGTGATGCTAGAGCAATTCTTCATGAAGTACGTTTGGTCGGGCACGGGCATGGTGATGGTCTCGCTTCCGATTCTCACCAGAAGCCACTTGAGCAGCGACGACGACGACAGTAGTGCCAATACGGGCAGCAAGGTTAGTCAGCGAACAGAATATTTCACGACAGCCAGCAATCTGCTGAAGTCGGGCGCCGATGCTGTTGAGCGACTCATGTCGTCGTACAAGGAAATCGTCGAGCTCGCCGGCTACACAAGCCGCGTGTCCGAAATGTTCCAAGTGTTTGAGGATGTCTCGCAAGGCGTCTACAAGAAAACAATCGTCACCGACGAGAGCTCAACGCAAGGAATCATTGAGTTCAAGAATGGTCAACCAATCGCTAACGGAAAAATATTCTACGATACTGAAAACATGTCGATAACACTGAAAAACGTTCCTGTCGTCACTCCCAATTGCGACATTGTCGTTCCCAACTTGACCCTCACAATTCAGCCCGGCATGCACCTTCTCATCACCGGTCCAAACGGCTGCGGAAAATCAAGTTTGTTTAGAATTCTGAGCGGATTGTGGCCGATCTACAACGGAGAGCTCCACTTGCCGAAAACTTTCGAGGACAAGCCCATGATGTTCTACATTCCACAGAGGCCGTACATGTCGATCGGAAGCCTTCGCGAACAAATCATCTATCCCGACTCGCTCGAAGACATGATTGCAAAGAAGATTACGGAGGAGAAGTTGAGAGAAATTCTGCGAATGGTGTCGCTCGAGCACATCGCCATCAGAGATAGCTTCGACGAAATTCGCGATTGGAAGGACACGCTGAGTGGAGGCGAGAAGCAGCGAATGGCCATAGCTCGACTTTTCTATCACAGACCACAGTACGCCCTTTTGGACGAGTGCACGTCAGCAGTCTCGATCGACGTGGAGAGCTCAATTTACGAGACCGCAAAGAACATGGGCATCACACTACTAACAATCACACACCGTCCAACGCTTTGGAAGTTTCACACAAACATTTTGAAGTTTGACGGAATGGGCGGCTGGGTGTTTGAGCCGCTCAACGAGAAAGAGCAA
Protein: 725 (aa)
MPAVVSKFLSSAVDTYERRGKNAEVISKTLLTTAVLAYVVKISYPHIRRKIKSNEKPTSNGTCVNNNNNNTIEKYGKGGKGSSSSGGKTEDVKEKKLSLIERALRQPGLNLQFVLQLRKLIEIMIPSLICYETGLLSVHTMCLISRTFLSIYVAAMEGAIVKYIVRKDVKNFVYMLLKWFGIAIPATFINSMIRYLENKLALAFRTRLVNHAYKQYFTHNTYYKVSNLDGRIENADHRLTDDITTFSSSIAHLYSHLTKPCFDLMLIGLALAQSSYKMKANIVNGPLLGFFVITTTAHIMRIVSPRFGQLVSEEANRNGYLRHIHSRIITNAEEIAFYGGHKVEHMQLSEAYQRLCRQMNKIFSQKLWFVMLEQFFMKYVWSGTGMVMVSLPILTRSHLSSDDDDSSANTGSKVSQRTEYFTTASNLLKSGADAVERLMSSYKEIVELAGYTSRVSEMFQVFEDVSQGVYKKTIVTDESSTQGIIEFKNGQPIANGKIFYDTENMSITLKNVPVVTPNCDIVVPNLTLTIQPGMHLLITGPNGCGKSSLFRILSGLWPIYNGELHLPKTFEDKPMMFYIPQRPYMSIGSLREQIIYPDSLEDMIAKKITEEKLREILRMVSLEHIAIRDSFDEIRDWKDTLSGGEKQRMAIARLFYHRPQYALLDECTSAVSIDVESSIYETAKNMGITLLTITHRPTLWKFHTNILKFDGMGGWVFEPLNEKEQ
| Type | Start | End | Length |
| CDS |
11680 |
11881 |
202 |
| CDS |
11950 |
12279 |
330 |
| CDS |
12358 |
12514 |
157 |
| CDS |
12582 |
13041 |
460 |
| CDS |
13122 |
13533 |
412 |
| CDS |
14686 |
15299 |
614 |
| intron |
11882 |
11949 |
68 |
| intron |
12280 |
12357 |
78 |
| intron |
12515 |
12581 |
67 |
| intron |
13042 |
13121 |
80 |
| intron |
13534 |
14685 |
1152 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001863662 |
ATP-binding cassette sub-family D member 1 [Culex quinquefasciatus] gb|EDS38920.1| ATP-binding cassette sub-family D member 1 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR010509 |
ABC transporter, N-terminal |
|
| InterPro |
IPR003439 |
ABC transporter-like |
|
| InterPro |
IPR017940 |
ABC transporter, integral membrane type 1 |
|
| InterPro |
IPR011527 |
ABC transporter, transmembrane domain, type 1 |
|
| InterPro |
IPR017871 |
ABC transporter, conserved site |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Gene Ontology(MF) |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
|
| Gene Ontology(MF) |
GO:0016887 |
ATPase activity |
|
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.012 |
| Pfam |
PF05729.7 |
NACHT domain |
0.11 |
| Pfam |
PF02463.14 |
RecF/RecN/SMC N terminal domain |
0.13 |
| Pfam |
PF01078.16 |
Magnesium chelatase, subunit ChlI |
0.14 |
| Pfam |
PF00005.22 |
ABC transporter |
1.5e-12 |
| Pfam |
PF13476.1 |
AAA domain |
0.0099 |
| Pfam |
PF00488.16 |
MutS domain V |
0.031 |
| Pfam |
PF06472.10 |
ABC transporter transmembrane region 2 |
1.2e-97 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.026 |
| Pfam |
PF13304.1 |
AAA domain |
4e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.08845 |
| H. sapiens |
ENSP00000218104 |
| B. mori |
BGIBMGA004616-TA |
| T. castaneum |
TC015333 |
| A. gambiae |
AGAP002071 |
| A. mellifera |
GB16336-PA |
| P. humanus |
PHUM156700-PA |
| C. quinquefasciatus |
CPIJ013253 |
| M. musculus |
ENSMUSG00000031378 |
| D. plexippus |
DPOGS213906PA |
| D. melanogaster |
FBgn0039890 |
| N. vitripennis |
NV10630-PA |
| H. melpomene |
HMEL006069-PA |
| M. musculus |
ENSMUSG00000055782 |
| H. sapiens |
ENSP00000310688 |
| A. aegypti |
AAEL010047 |
| S. invicta |
SI2.2.0_07769 |