MidgeBase gene description page [Pn.03033]
Outline
| Gene ID | Pn.03033 |
| Type | Protein coding gene |
| Scaffold | PnScaf2590 |
| Start | 88877 |
| End | 89567 |
| Direction | - |
Sequence
Transcript: 528 (bp)
ATGCCTTGCCTCGCTATTCTTCATCGAATTAATTTCGTGTTAACATACACGCTGACTATTCTCGCTGCAGTTACAATTTGTTTGTCGATTTCGCCATTATTTCTGCAAACACAAACGGCGAGCATTCATTTGAATGCGAGTAATGAAACAGTGATAAAAAATCGACATTATGCCATTGTTGCTTTTGACCTTCAAGCAAATTTAAGTGCTGTATTTAACTGGAATATTAAGGAATTATTTGTTCATGTGAATGCAAAGTACACAACGGCCAGAGATGATACACAGATAGAGATGATGATATGGGATAGAATTGAACTTCGTGGTGCAGCTACCGGCACAAACAACAGCAACATCGTCGATCTGCGAAATCAATATGCCGAGTACTTTCTCGACGACTCAAACCATCTTTGCGGCAAGAACATAACGCTAACGTTCCACTGGAATTCACTCCCCAATGCTGGTGCGCTTAATTGGCATACAGATAATGAGAGCAGTGTGACATTCTCGTATCCCGATTGCCACGTCGAC
Protein: 176 (aa)
MPCLAILHRINFVLTYTLTILAAVTICLSISPLFLQTQTASIHLNASNETVIKNRHYAIVAFDLQANLSAVFNWNIKELFVHVNAKYTTARDDTQIEMMIWDRIELRGAATGTNNSNIVDLRNQYAEYFLDDSNHLCGKNITLTFHWNSLPNAGALNWHTDNESSVTFSYPDCHVD
| Type | Start | End | Length |
| CDS |
88880 |
89171 |
292 |
| CDS |
89332 |
89567 |
236 |
| intron |
89172 |
89331 |
160 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002131965 |
PREDICTED: similar to probable microsomal signal peptidase 22 kDa subunit [Ciona intestinalis] |
7e-22 |
| InterPro |
IPR007653 |
Signal peptidase 22kDa subunit |
|
| Gene Ontology(BP) |
GO:0006465 |
signal peptide processing |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(CC) |
GO:0005787 |
signal peptidase complex |
|
| Gene Ontology(MF) |
GO:0008233 |
peptidase activity |
|
| Pfam |
PF04573.7 |
Signal peptidase subunit |
5.9e-30 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes