MidgeBase gene description page [Pn.03008]
Outline
| Gene ID | Pn.03008 |
| Type | Protein coding gene |
| Scaffold | PnScaf2586 |
| Start | 23742 |
| End | 25325 |
| Direction | + |
Sequence
Transcript: 999 (bp)
ATGAGCGAACCGATCAGAGTTTGTGTGACAGGTGCAGCCGGCCAAATCGGCTACTCTCTCCTCTACATGATTGCCAATGGCGATGTGTTTGGAAAGGAACAGAAAGTGATCTTGACTCTGCTGGATATCCCGCCAATGATGGGCGTCCTCGGAGGAGTCGTCATGGAATTGTCAGACTGCGCATTTACTCTTCTGTCTGAAGTAATTCCGACAAGTGATGTGGCAGTTGCATTTAAAGACGTTTCAGTCGCCTTCCTCGTTGGCTCAATGCCTCGCAAAGAGGGCATGGAACGCAAAGATCTGCTCTCAGCTAACGTAAAGATCTTCAAAGTTCAGGGCGAAGCTTTGAACACCTACGCTAAAAAAGACGTCAAGGTTTTAGTTGTTGGAAACCCAGCCAACACCAATGCATTGATTTGCTCGCACTACGCTCCGTCAATCCCAAAGGAGAATTTCACAGCCATGACAAGACTTGATCAAAACCGTGCTCGCGCCCAGATTGCACAGAAGATCGGAACTGATATTACTAACGTCAAGAACATTTTCATTTGGGGAAATCACTCAGCAACGCAATACCCCGATTGCAGCAACGGAACGGCCAACGGAAAGCCCATCGAAGACCAAGTCGATGCCGCTTACTTGCAGGGCGAGTTTGTGACAACAGTACAAAAGAGAGGAGCAGCTGTTATTGCAGCAAGAAAGATGAGCTCGGCAATGAGTGCTGCCAAGGCGGCCGCTGACCACGTTCGCGATTGGTGGAAGGGAACCGAGCCAGGCAACTACGTTTCGATGGGTGTCGTTTCGCCCAAAGACAACCCCTACAACGTCCCCGAGGGAATTGTCTTCTCATTCCCCGTGGAAGTCAAAAACAAGCAATGGAGTATCGTCCCTGGCTTCAAGGTCAGTGACTTTGCTCGCGGAAAATTGGACATCACAACAAAGGAGTTGCTCGAGGAGAAGGAAGAAGCCATGGCAGTTTGCAACTCAGACTCAAAGATT
Protein: 333 (aa)
MSEPIRVCVTGAAGQIGYSLLYMIANGDVFGKEQKVILTLLDIPPMMGVLGGVVMELSDCAFTLLSEVIPTSDVAVAFKDVSVAFLVGSMPRKEGMERKDLLSANVKIFKVQGEALNTYAKKDVKVLVVGNPANTNALICSHYAPSIPKENFTAMTRLDQNRARAQIAQKIGTDITNVKNIFIWGNHSATQYPDCSNGTANGKPIEDQVDAAYLQGEFVTTVQKRGAAVIAARKMSSAMSAAKAAADHVRDWWKGTEPGNYVSMGVVSPKDNPYNVPEGIVFSFPVEVKNKQWSIVPGFKVSDFARGKLDITTKELLEEKEEAMAVCNSDSKI
| Type | Start | End | Length |
| CDS |
23742 |
23744 |
3 |
| CDS |
24220 |
24598 |
379 |
| CDS |
24706 |
25322 |
617 |
| intron |
23745 |
24219 |
475 |
| intron |
24599 |
24705 |
107 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001652832 |
malate dehydrogenase [Aedes aegypti] gb|EAT40580.1| malate dehydrogenase [Aedes aegypti] |
1e-131 |
| InterPro |
IPR011274 |
Malate dehydrogenase, NAD-dependent, cytosolic |
|
| InterPro |
IPR001236 |
Lactate/malate dehydrogenase, N-terminal |
|
| InterPro |
IPR010945 |
Malate dehydrogenase, type 2 |
|
| InterPro |
IPR022383 |
Lactate/malate dehydrogenase, C-terminal |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR001557 |
L-lactate/malate dehydrogenase |
|
| InterPro |
IPR001252 |
Malate dehydrogenase, active site |
|
| InterPro |
IPR015955 |
Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(BP) |
GO:0044262 |
cellular carbohydrate metabolic process |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(BP) |
GO:0006108 |
malate metabolic process |
|
| Gene Ontology(MF) |
GO:0016616 |
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016615 |
malate dehydrogenase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0030060 |
L-malate dehydrogenase activity |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF00056.18 |
lactate/malate dehydrogenase, NAD binding domain |
4.7e-38 |
| Pfam |
PF02866.13 |
lactate/malate dehydrogenase, alpha/beta C-terminal domain |
1.7e-36 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL007707 |
| H. sapiens |
ENSP00000233114 |
| H. melpomene |
HMEL008268-PA |
| H. sapiens |
ENSP00000446395 |
| H. sapiens |
ENSP00000377945 |
| T. castaneum |
TC008177 |
| D. melanogaster |
FBgn0262782 |
| P. vanderplanki |
Pv.16828 |
| B. mori |
BGIBMGA010423-TA |
| P. humanus |
PHUM154200-PA |
| C. quinquefasciatus |
CPIJ801835 |
| N. vitripennis |
NV16898-PA |
| M. musculus |
ENSMUSG00000020321 |
| H. sapiens |
ENSP00000438144 |
| A. mellifera |
GB18727-PA |
| D. plexippus |
DPOGS200490PA |
| A. gambiae |
AGAP009510 |
| S. invicta |
SI2.2.0_15938 |