MidgeBase gene description page [Pn.02988]

Outline

Link to gbrowse

Gene ID Pn.02988
Type Protein coding gene
Scaffold PnScaf2561
Start 13332
End 18374
Direction +

Sequence

Transcript: 3927 (bp)

 ATGAATTCCCAAAGTTCAAGGAAAAAGCCGCTGAATCCGCTGCAGAATGCATCGCGCTTGAGCAAAATGACTTTCTGGTGGCTGAGAGACACTTACAAAATCGGCATGACGCGGCCATTTACGGACGAGGACATTTACCAGACGATCGACCATCACGAGTGCGATCGAATCGCGCGGAAGTTTAAAGCGCTGTGGCAGCGACAGCTCGAGGGCTCAAAGCGACCGAGCACGCTGCGACTCATCTACGATGCATACGGACTGCCGGTGATCACCATCGGCCTGCTTTTCTCAATCTGCGAAACAGTCATGAGATGCGCACAGCCGCTGTTGCTGGGCGAGCTGCTCACGTACTTTGCCGAGGAGAATTCCTCGAAAACGTCTGCCTACATCTACGCCAGCGGCATCGTTTTGTGCTCGTTGGTTCCCGTTCTGACGTTCCATCCTTTCATCTACTACATTTTCGAAGTCGGCATGAAGATACGAATCGGCTGCTCGCGATTAGTGTACGATAAGATTCTACGCATCTCGAAGTCGGTGCAAGAAGACGGCATGCATGGAAAGGTGATAAATTTGTTGTCGAACGATTTCGCAAAGTTCGACCTTGCAATCGCCTTCTTGCACGACCTGTGGAAAGGACCGTTCGAGACGATTCTGCTGGGCTTTTTGATCTACCGCGAGGTCGGAATTTCGGGTGTTTTCGGAATCTTGTTCATCCTCTCCTTCATCCCCATTCAATCCTACATCGGCCGAAAGGCAGCTCACTTTAGAAATCAAACGACCAAGCGTACAGACATTCGCGTGCGACTGATGAACGAAATCATCAACGGAATTCAGGTCATCAAGATGTATTCGTGGCAGCAGAACTTTGCAAAGGTGATAGAGAAGGTGCGCAAGAAGGAGATGCGAGCAGTGAAGGGAAGCAGCTACATTCTTGCACTTCTGTATGCGCTCTGGGCAGTGTCACGTGTCTCGTTGTTCCTCACGCTCATAACGTTCGTCAATGCGGGCAATGTGCTAACGGCGCGCAAGGTCTTCATCGTTACGGCCTTCTACAACATCCTCAACATGTCGATGGTTCACTTCTGGCCGCTCGCCATAACCTTCTGCGCCGAGGGCTACGTCTCCACGAAGCGCCTCCTCGACTTCCTGCTGATGCCCGAAAAGAAGAAATCGCCTGCGCAAAAAACTATAATCGGCGAAAAGGAGAAGGAAGTGCTGTTGCCCACGCCGCAGAGAGTCCACAATAGCGAGATTTCGAGCAAGGAAAGCGCAATTTCGTTCAAAGACGTCTCGGCCGATTGGATCAACGCTGACATGGAGAAAGTAACGGCACTCGAGCAAATCACGTTTGACTTCAAGCGCGGCAAGACGTACGCCATCATCGGCTCGGTCGGTGCCGGCAAAACGTCGCTGCTGCAAGCGGTTCTCGGCGAACTCGAGATCGACGCCGGCCGCATCGAGATCAACGGCTTGCTCAGCTACGCCAACCAAGAGGCCTTCCTCTTCGAAGGCACGGTGCGCAGCAACATTCTGTTCACGGAAACGTTCGACGAGAAAAAGTTCGCCCGAGTGACGGCGGCGTGTGGGCTGCTGAAGGATTTCGAGCAGCTCGAGAAAGGCGACTTGACCGTGGTGGGCGAGAAGGGAGTCTCGCTGAGTGGCGGGCAGAAGGCCCGCATTAATCTCGCTCGGGCGGTGTACAAGGAAGCCGACATCTACCTCCTCGACGACATCCTCAGTGCAGTCGATGCGCACGTGGGCAGCACCATTTTCAACGAGTGTGTCATGGATTATCTGCGAGACAAAACAGTCCTTCTCGTCACTCATCAGCTGCAGTATCTCAGCAAGATCGAGGACATCATCGTGCTGGCGGACGGGCAGATAAAGGCGAGCGGGTCGTACAGCGAACTGAAGGACAGGGAAATTGCGAGTTTGTTGCCATGCGAGAGCGAAAATAATGAGGAAGAAAGCGAGAAGAAAAACGAGAAGTTCTTTGAGGAAATCACAAAACATCTGACGACAAAGCCCGACGAGGCGGAAACATATAACGAGAGGGAGTCGCAGGAAGTTGGCACAGTCAGCTTCGAAGTTTACAAGAATTATGTGCGAGCCATTCAGAATGCGCCGCTCGTCATTATCGTCCTGTTTCTTCGCGTACTTAATCAGTCGCTTGCATCGTTTATCGATTATTTTGTCTCGCAGTGGGTCAACTGGGAGGAATCGGTGGCGAGGGTTGCCAACGCAACAACAATTGCAAATGACACGCTCACGAGTTATGACGCTGGCAGCGGCAGTGATGCTGAAATTGATGCGAAGCGACAATGGTTCATTAATGTTTATATTGCAATCATATGCACCTTCATTGTTCTCATCCTAAAGGCCGAATTTTCCTTCTTCTACTCGTTGCTGAGAGCGTCGCAGAACCTTCACAACATGATGTTCAATGGACTGGTCAACACGTACGTGCAGTTCTTCAACCAGAATCCATCTGGAAGAATTTTGAATCGCTTTTCCAAGGACATCGGCAGCATCGACACCCAACTGCCCAACGTCATGTTCGAGTGCATTTGCTTCGTTCTGGAATTTATTGCAATCATGATTCTCGTGTCGCTCGTGAATGTTTACTTCGCCATCCCAACGCTCATCATGGCGATTATTCTCGTCGGACTGCGACATGTGTATGTGAACACATCGAGGAACATAAAACGGGTTGAGAGCATCTCAAAATCGCCGATATTCGCACACACAAACGCTACACTCCAAGGATTAACCACCATAAGAGCCTTAAGAGCTGAGAACGAGGTCGTCGAAAACTTCAACTACTATGTAGATCACAACACTTCGGCTTGGTTCTCCTTCTGGACAGTCACAAGGGCTTTCGCCTTCTGGCTCGACATCATCACCGTCATCTACATTGCAATCATCACCTTCTCGTTTGTTGAGATGAATGTCGAGAACGTTCCGGGCGGTAATGTGGGGCTTGCAATCACACAAATTATAGGATTAATTGGTATGACACAATGGGGCATTAGGCAAACAAGTGAACTTGAAAATCAAATGGTGAGCGTAGAGCGAGTTATGGACTATGCAAATCTGCCATCAGAAATGAAGAATGAGAAGGAGCCGCCGGCAGATTGGCCTTCGGAGGGCGAAGTTGAGTTCGAGAATCTGTCGCTCTTCTACAAGAACGAGGAGTGCAAGCCGTCCATAAGGAACCTAAACTTTAAAATTCAGCCGCAGGAAAAAGTCGGAATCGTCGGCCGAACGGGCTCGGGCAAGTCCTCAATCATCCAGGCGCTCTTTAGGATGACGCGAATTGAAGGCAGCATCCGAATCGATGGCATCGACACGCAGCACATTGACCTCATCAACTTACGCAAAAACATTTCGATAATCCCACAGGATCCTGTTCTCTTCTCCGGTTCGCTGCGCTTCAACTTGGACGCATTCAGCGAGAGCTCCGACGATGCAATCTGGAAGGTTTTGGAGCTGGTCGAGCTGAAAGACACGATAAAATCGCTGACTGGTGGTCTGGAGTGCAAGATCTCGGACGGCGGCAGCAACTTTTCGGTTGGCCAGCGTCAGCTCATCTGCCTCGCGCGTGCCTTGCTGAGGAAAAACAAAATTCTGGTGCTGGACGAAGCGACAGCCAATGTCGATTATGAGACTGACAGGCTGATTCAGAAGACGATAAACACCGAGTTCTCGGACTGCACGGTGCTCACAATCGCCCATCGGTTGCACACAGTAATCCACTCCGATAAGATTCTCGTCATGGAGGGCGGCAACCTGGTCGAGTTTGATCATCCTTACCACTTGCTGAAAAACGAAAATGGATTTTTGCGGAAGCTTGTCAATCAGACCTCGCTCTCGCTGCTGCAGGAAGCTGAGAAGAGCTTTCGTGAGCAAGAGTCGAAAAAACTCAAG 

Protein: 1309 (aa)

 MNSQSSRKKPLNPLQNASRLSKMTFWWLRDTYKIGMTRPFTDEDIYQTIDHHECDRIARKFKALWQRQLEGSKRPSTLRLIYDAYGLPVITIGLLFSICETVMRCAQPLLLGELLTYFAEENSSKTSAYIYASGIVLCSLVPVLTFHPFIYYIFEVGMKIRIGCSRLVYDKILRISKSVQEDGMHGKVINLLSNDFAKFDLAIAFLHDLWKGPFETILLGFLIYREVGISGVFGILFILSFIPIQSYIGRKAAHFRNQTTKRTDIRVRLMNEIINGIQVIKMYSWQQNFAKVIEKVRKKEMRAVKGSSYILALLYALWAVSRVSLFLTLITFVNAGNVLTARKVFIVTAFYNILNMSMVHFWPLAITFCAEGYVSTKRLLDFLLMPEKKKSPAQKTIIGEKEKEVLLPTPQRVHNSEISSKESAISFKDVSADWINADMEKVTALEQITFDFKRGKTYAIIGSVGAGKTSLLQAVLGELEIDAGRIEINGLLSYANQEAFLFEGTVRSNILFTETFDEKKFARVTAACGLLKDFEQLEKGDLTVVGEKGVSLSGGQKARINLARAVYKEADIYLLDDILSAVDAHVGSTIFNECVMDYLRDKTVLLVTHQLQYLSKIEDIIVLADGQIKASGSYSELKDREIASLLPCESENNEEESEKKNEKFFEEITKHLTTKPDEAETYNERESQEVGTVSFEVYKNYVRAIQNAPLVIIVLFLRVLNQSLASFIDYFVSQWVNWEESVARVANATTIANDTLTSYDAGSGSDAEIDAKRQWFINVYIAIICTFIVLILKAEFSFFYSLLRASQNLHNMMFNGLVNTYVQFFNQNPSGRILNRFSKDIGSIDTQLPNVMFECICFVLEFIAIMILVSLVNVYFAIPTLIMAIILVGLRHVYVNTSRNIKRVESISKSPIFAHTNATLQGLTTIRALRAENEVVENFNYYVDHNTSAWFSFWTVTRAFAFWLDIITVIYIAIITFSFVEMNVENVPGGNVGLAITQIIGLIGMTQWGIRQTSELENQMVSVERVMDYANLPSEMKNEKEPPADWPSEGEVEFENLSLFYKNEECKPSIRNLNFKIQPQEKVGIVGRTGSGKSSIIQALFRMTRIEGSIRIDGIDTQHIDLINLRKNISIIPQDPVLFSGSLRFNLDAFSESSDDAIWKVLELVELKDTIKSLTGGLECKISDGGSNFSVGQRQLICLARALLRKNKILVLDEATANVDYETDRLIQKTINTEFSDCTVLTIAHRLHTVIHSDKILVMEGGNLVEFDHPYHLLKNENGFLRKLVNQTSLSLLQEAEKSFREQESKKLK 
Type Start End Length
CDS 13332 13844 513
CDS 13920 14142 223
CDS 14454 16128 1675
CDS 16275 16434 160
CDS 16497 16769 273
CDS 17060 17225 166
CDS 17374 18017 644
CDS 18099 18371 273
intron 13845 13919 75
intron 14143 14453 311
intron 16129 16274 146
intron 16435 16496 62
intron 16770 17059 290
intron 17226 17373 148
intron 18018 18098 81

Auto annotation result

Program/Analysis Accession Description Score/Expectation
BLASTP/NCBI-nr XP_001662529 ATP-binding cassette transporter [Aedes aegypti] gb|EAT35434.1| ATP-binding cassette transporter [Aedes aegypti] 0.0
InterPro IPR003593 AAA+ ATPase domain
InterPro IPR003439 ABC transporter-like
InterPro IPR017940 ABC transporter, integral membrane type 1
InterPro IPR011527 ABC transporter, transmembrane domain, type 1
InterPro IPR001140 ABC transporter, transmembrane domain
InterPro IPR017871 ABC transporter, conserved site
Gene Ontology(BP) GO:0006810 transport
Gene Ontology(BP) GO:0055085 transmembrane transport
Gene Ontology(CC) GO:0016021 integral to membrane
Gene Ontology(MF) GO:0005524 ATP binding
Gene Ontology(MF) GO:0000166 nucleotide binding
Gene Ontology(MF) GO:0017111 nucleoside-triphosphatase activity
Gene Ontology(MF) GO:0042626 ATPase activity, coupled to transmembrane movement of substances
Gene Ontology(MF) GO:0016887 ATPase activity
Pfam PF13207.1 AAA domain 5e-05
Pfam PF08477.8 Miro-like protein 3.8e-08
Pfam PF03205.9 Molybdopterin guanine dinucleotide synthesis protein B 0.0048
Pfam PF07728.9 AAA domain (dynein-related subfamily) 0.14
Pfam PF00664.18 ABC transporter transmembrane region 7.2e-48
Pfam PF13481.1 AAA domain 0.075
Pfam PF06414.7 Zeta toxin 0.00043
Pfam PF10662.4 Ethanolamine utilisation - propanediol utilisation 0.0069
Pfam PF10412.4 Type IV secretion-system coupling protein DNA-binding domain 0.026
Pfam PF00350.18 Dynamin family 0.00066
Pfam PF05673.8 Protein of unknown function (DUF815) 6.5e-05
Pfam PF13401.1 AAA domain 1.3e-05
Pfam PF13191.1 AAA ATPase domain 0.00037
Pfam PF01580.13 FtsK/SpoIIIE family 0.00075
Pfam PF13604.1 AAA domain 0.0038
Pfam PF13555.1 P-loop containing region of AAA domain 1.2e-07
Pfam PF01935.12 Domain of unknown function DUF87 0.048
Pfam PF01926.18 50S ribosome-binding GTPase 8e-06
Pfam PF00931.17 NB-ARC domain 0.095
Pfam PF00006.20 ATP synthase alpha/beta family, nucleotide-binding domain 0.032
Pfam PF00004.24 ATPase family associated with various cellular activities (AAA) 0.0031
Pfam PF00005.22 ABC transporter 9e-35
Pfam PF00437.15 Type II/IV secretion system protein 0.01
Pfam PF13238.1 AAA domain 0.13
Pfam PF13476.1 AAA domain 9.7e-07
Pfam PF00009.22 Elongation factor Tu GTP binding domain 0.074
Pfam PF02492.14 CobW/HypB/UreG, nucleotide-binding domain 0.0053
Pfam PF03308.11 ArgK protein 0.075
Pfam PF03193.11 Protein of unknown function, DUF258 6e-08
Pfam PF13304.1 AAA domain 1.3e-10
Pfam PF03266.10 NTPase 0.0046

Expression level (RPKM)

Paralog/Ortholog genes

Paralogous genes

Gene ID
Pn.14889
Pn.11599
Pn.08990
Pn.11912
Pn.14888
Pn.13138
Pn.07854
Pn.16306
Pn.01961
Pn.12029
Pn.08797
Pn.08799
Pn.09665
Pn.15480
Pn.04035

Orthologous genes

Species Gene ID
P. vanderplanki Pv.05694
H. sapiens ENSP00000261200
C. quinquefasciatus CPIJ001311
S. invicta SI2.2.0_05651
T. castaneum TC006467
H. sapiens ENSP00000461615
T. castaneum TC014589
H. sapiens ENSP00000382342
T. castaneum TC008570
B. mori BGIBMGA010330-TA
N. vitripennis NV50086-PA
D. plexippus DPOGS208075PA
A. gambiae AGAP008436
C. quinquefasciatus CPIJ004604
H. sapiens ENSP00000395160
A. mellifera GB12525-PA
T. castaneum TC014090
D. melanogaster FBgn0032018
N. vitripennis NV18755-PA
A. gambiae AGAP004603
D. melanogaster FBgn0039207
A. aegypti AAEL013833
H. sapiens ENSP00000359463
H. sapiens ENSP00000403510
D. plexippus DPOGS208066PA
C. quinquefasciatus CPIJ008281
D. melanogaster FBgn0032026
H. sapiens ENSP00000244533
N. vitripennis NV12724-PA
A. aegypti AAEL005929
A. aegypti AAEL012395
H. sapiens ENSP00000359478
H. sapiens ENSP00000413046
S. invicta SI2.2.0_05028
D. plexippus DPOGS208495PA
P. vanderplanki Pv.01016
H. sapiens ENSP00000285238
H. sapiens ENSP00000431232
P. humanus PHUM513390-PA
H. sapiens ENSP00000382340
H. melpomene HMEL003351-PA
P. humanus PHUM129220-PA
P. humanus PHUM351610-PA
A. mellifera GB15227-PA
T. castaneum TC013752
A. aegypti AAEL015290
T. castaneum TC013751
A. mellifera GB17432-PA
H. melpomene HMEL003342-PA
H. melpomene HMEL003354-PA
H. sapiens ENSP00000349017
T. castaneum TC008035
H. sapiens ENSP00000265586
D. melanogaster FBgn0034612
T. castaneum TC009892
C. quinquefasciatus CPIJ011962
H. melpomene HMEL014185-PA
T. castaneum TC014089
M. musculus ENSMUSG00000032849
H. sapiens ENSP00000261201
A. mellifera GB16790-PA
D. melanogaster FBgn0263316
P. vanderplanki Pv.01014
A. gambiae AGAP004602
B. mori BGIBMGA010636-TA
D. melanogaster FBgn0032456
N. vitripennis NV13439-PA
T. castaneum TC014776
N. vitripennis NV10689-PA
T. castaneum TC014091
A. gambiae AGAP001775
A. gambiae AGAP004600
H. sapiens ENSP00000311326
D. melanogaster FBgn0051792
H. sapiens ENSP00000205557
D. plexippus DPOGS208076PA
T. castaneum TC001803
H. sapiens ENSP00000442024
H. sapiens ENSP00000263014
B. mori BGIBMGA010331-TA
P. humanus PHUM075990-PA
A. gambiae AGAP008437
C. quinquefasciatus CPIJ008283
A. gambiae AGAP003221
H. sapiens ENSP00000263016
H. sapiens ENSP00000440521
B. mori BGIBMGA010849-TA
N. vitripennis NV10690-PA
A. aegypti AAEL006622
N. vitripennis NV18247-PA
M. musculus ENSMUSG00000032842
D. melanogaster FBgn0010549
P. vanderplanki Pv.11642
A. aegypti AAEL005918
H. sapiens ENSP00000333926
N. vitripennis NV12660-PA
B. mori BGIBMGA007785-TA
M. musculus ENSMUSG00000025194
M. musculus ENSMUSG00000022822
N. vitripennis NV16516-PA
T. castaneum TC010434
P. vanderplanki Pv.17092
T. castaneum TC014379
D. plexippus DPOGS208713PA
H. melpomene HMEL008762-PA
S. invicta SI2.2.0_16567
H. melpomene HMEL003355-PA
A. gambiae AGAP007917
H. sapiens ENSP00000388657
D. plexippus DPOGS202687PA
N. vitripennis NV10688-PA
H. sapiens ENSP00000405002
A. mellifera GB18864-PA
B. mori BGIBMGA007784-TA
P. vanderplanki Pv.11345
H. sapiens ENSP00000366084
D. plexippus DPOGS208494PA
C. quinquefasciatus CPIJ011958
H. melpomene HMEL004293-PA
A. aegypti AAEL005026
C. quinquefasciatus CPIJ011652
N. vitripennis NV16518-PA
P. humanus PHUM602820-PA
H. sapiens ENSP00000398562
B. mori BGIBMGA007738-TA
C. quinquefasciatus CPIJ011963
T. castaneum TC014385
T. castaneum TC014380
P. vanderplanki Pv.02307
T. castaneum TC009891
H. sapiens ENSP00000263017
N. vitripennis NV50115-PA
N. vitripennis NV13919-PA
M. musculus ENSMUSG00000040136
A. gambiae AGAP009835
B. mori BGIBMGA011220-TA
A. gambiae AGAP001777
P. vanderplanki Pv.13486
A. mellifera GB11089-PA
D. plexippus DPOGS208084PA
P. vanderplanki Pv.02524
T. castaneum TC014403
H. sapiens ENSP00000303960
C. quinquefasciatus CPIJ016918
C. quinquefasciatus CPIJ001310
D. plexippus DPOGS208065PA
T. castaneum TC006468
H. sapiens ENSP00000431354
A. aegypti AAEL005043
T. castaneum TC014383
N. vitripennis NV15158-PA
M. musculus ENSMUSG00000030249
D. melanogaster FBgn0032908
T. castaneum TC013750
H. sapiens ENSP00000433333
T. castaneum TC010962
S. invicta SI2.2.0_11700
A. mellifera GB17987-PA
T. castaneum TC014775
N. vitripennis NV17018-PA
H. sapiens ENSP00000311030
H. sapiens ENSP00000263019
H. sapiens ENSP00000438530
A. aegypti AAEL005030
T. castaneum TC013749
A. aegypti AAEL012192
S. invicta SI2.2.0_02706
H. sapiens ENSP00000361593
H. sapiens ENSP00000378230
P. vanderplanki Pv.06004
D. melanogaster FBgn0039645
S. invicta SI2.2.0_16275
H. sapiens ENSP00000431653
A. aegypti AAEL015067
T. castaneum TC015423
N. vitripennis NV12659-PA
N. vitripennis NV18185-PA
A. aegypti AAEL013854
P. vanderplanki Pv.02308
T. castaneum TC014381
S. invicta SI2.2.0_12310
D. melanogaster FBgn0039644
T. castaneum TC015346
A. aegypti AAEL005937
H. sapiens ENSP00000434510
A. aegypti AAEL012386
A. aegypti AAEL005045
P. vanderplanki Pv.10855
S. invicta SI2.2.0_12449
D. plexippus DPOGS208634PA
T. castaneum TC014386
T. castaneum TC014384
M. musculus ENSMUSG00000036872
H. sapiens ENSP00000361608
H. sapiens ENSP00000427521
D. melanogaster FBgn0051793
M. musculus ENSMUSG00000020865
M. musculus ENSMUSG00000030834
A. aegypti AAEL013567
T. castaneum TC015918
T. castaneum TC014092
T. castaneum TC014382
T. castaneum TC012253
N. vitripennis NV12728-PA
D. plexippus DPOGS203074PA
N. vitripennis NV12726-PA
P. vanderplanki Pv.06006
H. melpomene HMEL011589-PA
A. gambiae AGAP006427
A. aegypti AAEL017209
C. quinquefasciatus CPIJ001520
A. aegypti AAEL004743
N. vitripennis NV15325-PA
H. sapiens ENSP00000437047
H. melpomene HMEL011731-PA
P. vanderplanki Pv.14013
D. melanogaster FBgn0038740
C. quinquefasciatus CPIJ001521
H. sapiens ENSP00000421755
C. quinquefasciatus CPIJ008284
B. mori BGIBMGA010332-TA
H. sapiens ENSP00000401855
H. sapiens ENSP00000374467
N. vitripennis NV12725-PA
D. plexippus DPOGS208571PA
C. quinquefasciatus CPIJ802159
T. castaneum TC014880
B. mori BGIBMGA007735-TA
N. vitripennis NV12592-PA
H. sapiens ENSP00000261202
H. sapiens ENSP00000378231
S. invicta SI2.2.0_00932
P. vanderplanki Pv.07190
A. aegypti AAEL013834