MidgeBase gene description page [Pn.02964]
Outline
| Gene ID | Pn.02964 |
| Type | Protein coding gene |
| Scaffold | PnScaf2537 |
| Start | 33404 |
| End | 49870 |
| Direction | + |
Sequence
Transcript: 2334 (bp)
ATGGCGGAAGGAAAAGTTCACTTTCAGATCGAGAGCAACCAACCGCCGCCGTATTATTCGTCGAACAGCCTCAAATCACCACCAACAACGACCAATTTTAGGAACACAGTAGCCGCTCTAGGCGGCTCGCAGAACAATCTGAATATATGTAACGGATCAATAATGGGCAGCAGCGGCGAGAAGCACGGATTAGTGAGGAAAATACCGAACGAGATGAGTTGCCAGAAAAAGCCAGCGGTACAATTGACACATCTCCTTCAGCGACCGCCCGTCGACATCGAATTCCAGAAGATCTCGTACTCGGTGTCGGAGGGTCGCGCGCGTGGCTACAAGACAATTCTGAAGGGCATCAACGGAAAGTTTCGATCCGGCGAGCTGGCAGCGATTATGGGCCCATCGGGTGCCGGCAAGAGCACGTTGATGAACATTCTCGCAGGATACAAAACGTCAAACTTAAGCGGTCACGTCTTGATAAATGGCAAGGAGCGCAACCTGAGACGCTTTCGAAAGCTGAGCTGCTACATCATGCAGGACGATCAACTGCTGCCGTATCTGACGGTGCGCGAGGCGATGCTCGTCAGCGCCAATCTTAAGCTCGGCAAGGATCTCACTGTCGCTGCCAAGAAGATCATCATCGACGAGATAATTGACGCCCTCGGGCTGTCCGAGTGCGCCACCACCAAGACAATAAGTTTATCGGGAGGCCAACGGAAGCGGCTGTCCGTGGCGCTCGAGCTAGTTAATAATCCTCCAGTGATGTTCCTCGACGAGCCGACGAGCGGCCTCGACAGCTCGTCCTGCTTTCAGTTGATTTCGCTGCTCAAGTCGCTGGCGCGCGGCGGCCGCACGATCGTTTGCACCATCCACCAGCCGTCGGCGCGTCTCTTCGAGATGTTCGACAATCTCTACATGCTCGCCGAGGGTCAGTGCATCTACCAGGGCATCGTGCACGGCCTCGTTCCCTTTCTCGCCTCCAACGGTTACGTGTGTCCGAGCTACCACAATCCCGCCGACTTCGTCATGGAGATCGCGTGCGGCGAGCACGGCGAGGCCGTCTACAAGCTCGTCACCGCCATGAACAACCGCAAGAGCATCAACAACTTTGGGCAGCAGGACGCGCTGCTGGCGGCGGAGAAGCCGCTCAATCTCTCCACCATCGCCATCCCCTCGACCTCCACGTCGGCCGCCGTCACCACCACGACGACCATCTCGAACGAAGCGGCGGCAGCGGCGAACGGCAACGGCCCGCTAGCGGCGCACATCGTAGCACACGACAGCGTCGTCGTGGACGTGGATTTGGTGAAGAACAGCGGCCGCGCTGAGTACACCATCATCAACATGAACTCGACGGCGCGCCTCGAGCAGAACGGAAACAACTCGCAGCAGCAGCAGGTGCAGCAGGTGATCGGGCCGACGACCTCGCTGCTCGACTCCTCCACCGAGAGCGTGATCGTGATGCGCAAGAAGGAAGCCCACAAGAACCACATCAACGGCTTCCCGACGTCGTCGTGGACGCAATTCTGGATCCTCCTCAAGCGAACATTCCTCACCATCATCCGCGACCAGACGCTCACGCAGATGCGCCTCGTGTCGCACATCGTGGTCGGCGCCATCATCGGCATGATCTACTACGGCATCGGCAATGATGCCAGCAAGATTATGAGCAACACCGGGTGCCTCTTCTTCACCACTCTCTTCACCATGTTCACCGCCATGATGCCCACCATTCTCACTTTCCCCTCGGAGATGTCGGTGTTCATACGCGAGCATCTAAACTACTGGTATTCTCTGAAGTCCTATTACTTTGCCAAAACGATAGCCGATCTGCCCTTTCAGGTTCTATTCACCAGCGTCTATGTGCTCGTGGTGTATTTGCTGACGAGTCAGCCGATGGAGGCAGATCGCATCGGAATGTTCGTGTTAATTTGCATTCTCACGTCGCTGGTGGCGCAGAGTTTGGGACTGTTGATAGGTGCTGGTATGAGCGTGGAGACGGGCGTGTTTTTGGGCCCTGTGACGACAATTCCAACGATATTGTTTTCAGGATTCTTTGTCAATTTCAACGTCATTCCGAATTATCTCAAATGGGTGACCTACGTAAGCTACGTTCGCTTCGGTTTCGAAGGTGCTATGATTTCCGTCTACGGTCTCGGTCGCGAGAAGCTCGAGTGCGAGGAGATTTACTGTCACTACCGCGACCCGAAGAAGTTCCTCGCGGAAATGTCGATGGCGGACGCCAACTTCTGGGTCGATGCGGCGGCACTGACCGGCATCTTCATCGGACTGCGAATCATCGCGTATTTTGTGCTGAGATGGAAGCTCCACTCGATACGC
Protein: 778 (aa)
MAEGKVHFQIESNQPPPYYSSNSLKSPPTTTNFRNTVAALGGSQNNLNICNGSIMGSSGEKHGLVRKIPNEMSCQKKPAVQLTHLLQRPPVDIEFQKISYSVSEGRARGYKTILKGINGKFRSGELAAIMGPSGAGKSTLMNILAGYKTSNLSGHVLINGKERNLRRFRKLSCYIMQDDQLLPYLTVREAMLVSANLKLGKDLTVAAKKIIIDEIIDALGLSECATTKTISLSGGQRKRLSVALELVNNPPVMFLDEPTSGLDSSSCFQLISLLKSLARGGRTIVCTIHQPSARLFEMFDNLYMLAEGQCIYQGIVHGLVPFLASNGYVCPSYHNPADFVMEIACGEHGEAVYKLVTAMNNRKSINNFGQQDALLAAEKPLNLSTIAIPSTSTSAAVTTTTTISNEAAAAANGNGPLAAHIVAHDSVVVDVDLVKNSGRAEYTIINMNSTARLEQNGNNSQQQQVQQVIGPTTSLLDSSTESVIVMRKKEAHKNHINGFPTSSWTQFWILLKRTFLTIIRDQTLTQMRLVSHIVVGAIIGMIYYGIGNDASKIMSNTGCLFFTTLFTMFTAMMPTILTFPSEMSVFIREHLNYWYSLKSYYFAKTIADLPFQVLFTSVYVLVVYLLTSQPMEADRIGMFVLICILTSLVAQSLGLLIGAGMSVETGVFLGPVTTIPTILFSGFFVNFNVIPNYLKWVTYVSYVRFGFEGAMISVYGLGREKLECEEIYCHYRDPKKFLAEMSMADANFWVDAAALTGIFIGLRIIAYFVLRWKLHSIR
| Type | Start | End | Length |
| CDS |
33404 |
33525 |
122 |
| CDS |
39187 |
39301 |
115 |
| CDS |
45374 |
45520 |
147 |
| CDS |
45625 |
45683 |
59 |
| CDS |
46437 |
46761 |
325 |
| CDS |
47036 |
48002 |
967 |
| CDS |
48356 |
48456 |
101 |
| CDS |
48869 |
49039 |
171 |
| CDS |
49475 |
49592 |
118 |
| CDS |
49659 |
49867 |
209 |
| intron |
33526 |
39186 |
5661 |
| intron |
39302 |
45373 |
6072 |
| intron |
45521 |
45624 |
104 |
| intron |
45684 |
46436 |
753 |
| intron |
46762 |
47035 |
274 |
| intron |
48003 |
48355 |
353 |
| intron |
48457 |
48868 |
412 |
| intron |
49040 |
49474 |
435 |
| intron |
49593 |
49658 |
66 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001658974 |
abc transporter [Aedes aegypti] gb|EAT40103.1| abc transporter [Aedes aegypti] |
0.0 |
| InterPro |
IPR020064 |
ABC transporter, G1-like |
|
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003439 |
ABC transporter-like |
|
| InterPro |
IPR017871 |
ABC transporter, conserved site |
|
| InterPro |
IPR013525 |
ABC-2 type transporter |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Gene Ontology(MF) |
GO:0016887 |
ATPase activity |
|
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.0048 |
| Pfam |
PF13207.1 |
AAA domain |
0.0044 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
0.0096 |
| Pfam |
PF00006.20 |
ATP synthase alpha/beta family, nucleotide-binding domain |
0.017 |
| Pfam |
PF13481.1 |
AAA domain |
0.014 |
| Pfam |
PF12846.2 |
AAA-like domain |
0.024 |
| Pfam |
PF00005.22 |
ABC transporter |
6.9e-18 |
| Pfam |
PF13476.1 |
AAA domain |
0.07 |
| Pfam |
PF01061.19 |
ABC-2 type transporter |
9.3e-42 |
| Pfam |
PF13173.1 |
AAA domain |
0.077 |
| Pfam |
PF07274.7 |
Protein of unknown function (DUF1440) |
0.43 |
| Pfam |
PF08502.5 |
LeuA allosteric (dimerisation) domain |
0.022 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
2e-06 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.048 |
| Pfam |
PF13401.1 |
AAA domain |
0.048 |
| Pfam |
PF13304.1 |
AAA domain |
6.8e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.15885 |
| Pn.00864 |
| Pn.00866 |
| Pn.04052 |
| Pn.05833 |
| Pn.15693 |
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ007190 |
| P. humanus |
PHUM154210-PA |
| C. quinquefasciatus |
CPIJ019125 |
| H. melpomene |
HMEL006781-PA |
| P. humanus |
PHUM610130-PA |
| H. melpomene |
HMEL014574-PA |
| B. mori |
BGIBMGA005203-TA |
| D. plexippus |
DPOGS204358PA |
| A. mellifera |
GB17229-PA |
| A. aegypti |
AAEL013372 |
| C. quinquefasciatus |
CPIJ012364 |
| H. sapiens |
ENSP00000339744 |
| P. vanderplanki |
Pv.17069 |
| P. vanderplanki |
Pv.17417 |
| D. melanogaster |
FBgn0031516 |
| N. vitripennis |
NV14844-PA |
| P. vanderplanki |
Pv.05629 |
| H. sapiens |
ENSP00000420245 |
| H. sapiens |
ENSP00000381464 |
| H. sapiens |
ENSP00000420100 |
| D. plexippus |
DPOGS205649PA |
| H. sapiens |
ENSP00000381467 |
| C. quinquefasciatus |
CPIJ801608 |
| T. castaneum |
TC007467 |
| A. gambiae |
AGAP009850 |
| H. sapiens |
ENSP00000381475 |
| A. aegypti |
AAEL008672 |
| H. sapiens |
ENSP00000291524 |
| T. castaneum |
TC007466 |
| D. plexippus |
DPOGS212638PA |
| C. quinquefasciatus |
CPIJ007191 |
| P. vanderplanki |
Pv.07334 |
| B. mori |
BGIBMGA005202-TA |
| D. melanogaster |
FBgn0031220 |
| P. vanderplanki |
Pv.07333 |
| T. castaneum |
TC007074 |
| H. melpomene |
HMEL014575-PA |
| H. melpomene |
HMEL006594-PA |
| H. sapiens |
ENSP00000406874 |
| H. melpomene |
HMEL006780-PA |
| B. mori |
BGIBMGA005094-TA |
| P. vanderplanki |
Pv.06644 |
| D. melanogaster |
FBgn0031449 |
| N. vitripennis |
NV16927-PA |
| A. aegypti |
AAEL008629 |
| D. plexippus |
DPOGS212605PA |
| H. sapiens |
ENSP00000414541 |
| P. vanderplanki |
Pv.07332 |
| S. invicta |
SI2.2.0_00064 |
| N. vitripennis |
NV14845-PA |
| H. sapiens |
ENSP00000343820 |
| D. melanogaster |
FBgn0025683 |
| B. mori |
BGIBMGA005226-TA |
| A. mellifera |
GB19012-PA |
| T. castaneum |
TC008454 |
| D. plexippus |
DPOGS212609PA |
| C. quinquefasciatus |
CPIJ802036 |
| H. sapiens |
ENSP00000304111 |
| H. melpomene |
HMEL005297-PA |
| D. plexippus |
DPOGS205105PA |
| T. castaneum |
TC007047 |
| M. musculus |
ENSMUSG00000024030 |
| P. humanus |
PHUM349840-PA |
| A. aegypti |
AAEL008138 |
| P. humanus |
PHUM347630-PA |
| P. humanus |
PHUM602230-PA |
| A. mellifera |
GB16644-PA |
| P. humanus |
PHUM453210-PA |
| H. sapiens |
ENSP00000417667 |
| H. sapiens |
ENSP00000434318 |
| S. invicta |
SI2.2.0_03712 |
| N. vitripennis |
NV10274-PA |
| A. gambiae |
AGAP009463 |
| A. mellifera |
GB11259-PA |
| A. aegypti |
AAEL008635 |
| H. sapiens |
ENSP00000354995 |
| T. castaneum |
TC008293 |
| D. melanogaster |
FBgn0032167 |
| A. mellifera |
GB12359-PA |
| N. vitripennis |
NV11347-PA |
| N. vitripennis |
NV10033-PA |
| A. gambiae |
AGAP001858 |
| D. melanogaster |
FBgn0020762 |