MidgeBase gene description page [Pn.02956]
Outline
| Gene ID | Pn.02956 |
| Type | Protein coding gene |
| Scaffold | PnScaf2536 |
| Start | 27885 |
| End | 28403 |
| Direction | - |
Sequence
Transcript: 516 (bp)
ATGGACGACTTTTACGCAGACCCGTGGAGACTACACCGCCAGCTGGTGCCGTCATGGAGACGACCGTGGTTCGACGATTTCGGCTTTGGACTTTATCCATACGACTGGGACATGCCAAAGGAATTTCGTCAAGTGGAGCACAGAGTTCGCGAAATTCATCGAAAAGTTTGGAATGATTTTCCCGAACTCGGCGTTATCGACACGACAAACGGCTTCAAGGTCTGCGTGGACGTCCAGCAGTTCAAGCCCTACGAGATCACGGTGAGAACTGACAATAACGTAGTGACGGTCGAGGGAAGACACGACGAGCGTAAGGATAATCACGGGTTTGTCAGTCGTCAGTTCTCACGTCGCTACACGCTGCCAGCCAACTGCAATCCATACGGAGTCACTTCTGAGCTCTCATCGGATGGCGTCCTCACTATTCGAGCTCCACCGAGAATTTCGCCGCCACCACGAAGCGAACGAAACATTTTTATCGAGCGAACTGGACCTGTGAAAGCAATCAAAGCCAAC
Protein: 172 (aa)
MDDFYADPWRLHRQLVPSWRRPWFDDFGFGLYPYDWDMPKEFRQVEHRVREIHRKVWNDFPELGVIDTTNGFKVCVDVQQFKPYEITVRTDNNVVTVEGRHDERKDNHGFVSRQFSRRYTLPANCNPYGVTSELSSDGVLTIRAPPRISPPPRSERNIFIERTGPVKAIKAN
| Type | Start | End | Length |
| CDS |
27888 |
28403 |
516 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_523827 |
lethal (2) essential for life, isoform A [Drosophila melanogaster] ref|XP_002040124.1| GM15521 [Drosophila sechellia] ref|XP_002082824.1| GD25025 [Drosophila simulans] sp|P82147.1|L2EFL_DROME RecName: Full=Protein lethal(2)essential for life; AltName: Full=Protein Efl21 emb|CAB55438.1| lethal(2)essential for life [Drosophila melanogaster] emb|CAB60198.1| Efl21 protein [Drosophila melanogaster] gb|AAF47041.1| lethal (2) essential for life, isoform A [Drosophila melanogaster] gb|AAK77248.1| GH01960p [Drosophila melanogaster] gb|EDW56989.1| GM15521 [Drosophila sechellia] gb|EDX08409.1| GD25025 [Drosophila simulans] gb|ACL84992.1| l(2)efl-PA [synthetic construct] gb|ACL89914.1| l(2)efl-PA [synthetic construct] |
1e-26 |
| InterPro |
IPR001436 |
Alpha crystallin/Heat shock protein |
|
| InterPro |
IPR002068 |
Heat shock protein Hsp20 |
|
| InterPro |
IPR008978 |
HSP20-like chaperone |
|
| Pfam |
PF07078.6 |
Forty-two-three protein |
0.072 |
| Pfam |
PF00011.16 |
Hsp20/alpha crystallin family |
3.2e-25 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL010664 |
| P. vanderplanki |
Pv.09555 |