MidgeBase gene description page [Pn.02947]
Outline
| Gene ID | Pn.02947 |
| Type | Protein coding gene |
| Scaffold | PnScaf2531 |
| Start | 36995 |
| End | 38300 |
| Direction | + |
Sequence
Transcript: 951 (bp)
ATGGTCTCGAAAATGAATTATGACGACTTATTGTCGCATATTGGAACTTTCGGCGGCTATCAACTACGAAACTTTATTTTGTTATGCGTGCCCGTGATTTTGTGTGCATTTCATAAATTATCGAGTGTGTTCATATTGGGTAAAATGAATCACCGTTGCAAATTGTCGCCAAACGACACGATCTTCTCACTCCCGGTCGACGATCTAAACGCCTCGTTTCCGTTTGACGAAAGAAAGGGCAGCTTCTCGAAATGCGAATATTACAATGTGACAGCTACAACGAACGAAATAATTGAGTGCTCCGAATATGTGTGGGACTATGAAAAATTTCAATCATCAGCAATAAAAACGTTCCAATTAATTTGTGATCGAGATCACTTCAAAGCAACGTCGGATTCATTATTTATGATTGGTGTTTTCATCGGCTCGTTTGCATTCGGTCATCTTTCGGACAAATATGGAAGGCGAAAAATTTTCGTTCTCTCGCTGATATTCCAATTGATTTTTGGCTTCTTGACCGCTTTATCTACTAACTTCATTATGTTCACTATTTTTAGAATGATTGTCGGCGCTACCACCAGCGGAGTCTTTTTGGTAGCGTACTGCCTCTCGCTGGAAATGGTCGGAAAGGAAGGCAGAATGGTCGCCGGAGTCGTTTTCATGATGTTCTTCTCAGCGGGGTACCTCATTTCAGGATTTCTTGCCTTTTTCGTAACTGATTGGCGCTGGTATCAAATCTCTCTCACACTGCCCGGCTTACTTTTCTTGACATACTGGTGGTTCATCCCCGAAAGCATTCGCTGGTTGCTGGCCAACAACAGACAGCAAAAGGCCGTGGTGCAGATTCGAAAGATTGCCTCGTCAAACAAAGTCGAGCTGCCGCAAGAGATGCTCGATAAGCTCGTTGAAAGCGAAACGGAGAACACTGGCGAAAACAATGCAAAGCTCTTC
Protein: 317 (aa)
MVSKMNYDDLLSHIGTFGGYQLRNFILLCVPVILCAFHKLSSVFILGKMNHRCKLSPNDTIFSLPVDDLNASFPFDERKGSFSKCEYYNVTATTNEIIECSEYVWDYEKFQSSAIKTFQLICDRDHFKATSDSLFMIGVFIGSFAFGHLSDKYGRRKIFVLSLIFQLIFGFLTALSTNFIMFTIFRMIVGATTSGVFLVAYCLSLEMVGKEGRMVAGVVFMMFFSAGYLISGFLAFFVTDWRWYQISLTLPGLLFLTYWWFIPESIRWLLANNRQQKAVVQIRKIASSNKVELPQEMLDKLVESETENTGENNAKLF
| Type | Start | End | Length |
| CDS |
36995 |
37555 |
561 |
| CDS |
37853 |
38230 |
378 |
| CDS |
38286 |
38297 |
12 |
| intron |
37556 |
37852 |
297 |
| intron |
38231 |
38285 |
55 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843197 |
organic cation transporter protein [Culex quinquefasciatus] gb|EDS31256.1| organic cation transporter protein [Culex quinquefasciatus] |
5e-91 |
| InterPro |
IPR020846 |
Major facilitator superfamily domain |
|
| InterPro |
IPR005828 |
General substrate transporter |
|
| InterPro |
IPR016196 |
Major facilitator superfamily domain, general substrate transporter |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0022857 |
transmembrane transporter activity |
|
| Pfam |
PF04123.8 |
Domain of unknown function (DUF373) |
0.11 |
| Pfam |
PF00083.19 |
Sugar (and other) transporter |
1.9e-23 |
| Pfam |
PF07690.11 |
Major Facilitator Superfamily |
1.1e-21 |
| Pfam |
PF13347.1 |
MFS/sugar transport protein |
0.00078 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP004309 |
| C. quinquefasciatus |
CPIJ001657 |
| H. sapiens |
ENSP00000402760 |
| H. sapiens |
ENSP00000200652 |
| P. humanus |
PHUM284880-PA |
| H. sapiens |
ENSP00000409557 |
| H. sapiens |
ENSP00000245407 |
| M. musculus |
ENSMUSG00000040966 |
| H. sapiens |
ENSP00000275300 |
| H. sapiens |
ENSP00000439274 |
| P. vanderplanki |
Pv.12308 |
| A. aegypti |
AAEL012443 |
| M. musculus |
ENSMUSG00000020334 |
| D. melanogaster |
FBgn0019952 |
| S. invicta |
SI2.2.0_07204 |
| M. musculus |
ENSMUSG00000023828 |
| H. sapiens |
ENSP00000318103 |
| D. melanogaster |
FBgn0086365 |
| M. musculus |
ENSMUSG00000023829 |
| P. vanderplanki |
Pv.15872 |
| T. castaneum |
TC002947 |
| H. sapiens |
ENSP00000375989 |
| H. sapiens |
ENSP00000355919 |
| H. sapiens |
ENSP00000355920 |
| H. sapiens |
ENSP00000355930 |
| N. vitripennis |
NV10380-PA |
| A. mellifera |
GB13312-PA |