MidgeBase gene description page [Pn.02912]
Outline
| Gene ID | Pn.02912 |
| Type | Protein coding gene |
| Scaffold | PnScaf2507 |
| Start | 28898 |
| End | 32603 |
| Direction | - |
Sequence
Transcript: 3228 (bp)
ATGGCTGATGATGAATGTGCAATCAATAAAATCGCATCAGATGACACATTCTATCACGATCATCAGCGAGGCAACGACGACGATGGCGAAGACGAAGAAGAGATTCCGTACGACGACGACGAGAATACTGGAACGGAGATTACAATCACGCAGACCGTCCTCGACAGCAGCGAGATCCAGCTCGAGACGCCGATGGAGACGCACGGCATCTCGCTGATGGCGCTCGCCGCCGCCGAGGCCTCCGGCAGCGTGGTGAAGCCGAAGCGCCTGAGCGACGAGTTTTCGTCACTGGACGAGGAGGAGGAGGAGGAGCTCGAGGACGGCGAGGGATGCAAGCGGAGCGACGACGCCGCGTGCTGCAGCAAGTCGAGCTCGATCATCGAGCGCGAGGCGGACGAGCTGGACGAGGAGAACTCGCTGAACCCGCCATTCCTGTGCGACAAGGCGGAGACGTCGTCGTGCATTAGCCTGTGCTTCAGCAATAGTAGCAACAATATTTTCAACGTGCAATCAATCGACGATGCCATCGAGCGAGCTGACTTCGAGAGCGAACAGAAGCTCACCGGCGGCATAATCATCCGGGCCGCGTCGCTGACAGGAGATGAGGATAGACTGAATTTCGATTTGATTAATAACTCTAGAAGATCTGCAAACAATAATAATAATAATAATATGAATAATATTAGTAATAGTAATAACGTTAGTAGCAGCAGTAGTACTAGCAGTAGCAGTAATTGTAATAGTGATGAGATTGATGCACACGCATCGACCCGAAACGACGACGACGGTGCCACTGCCGCCGCCGCTAACGACGATCGCATCCGTCTCAGCGCAACGGACGATGCCGACGCGTCGGGCGCTAATAGCCGTCGCAATGAAATCACATCGACACCAACGAGTAGCCGCTGTAATGCAAACGACATAAGAAACAAAAGTACAACAATTCGTTCATCAAGTGCAAAGCAAAAGTTATCTGATAAATATTTAAGTATAATGAAGAATGTCGCCACCGCCACTACCGCCTCTGCCTCATCATCGATGACCGACTGCGACGACCACGGCGAGTCGTCCTCGAAGTCGACCGAGAAGAGCGCCTCGCTCGAGCAGCAGCCGTCGGTGTCCGCAGCCGCACATTCCACTCGCAATGTAAAAATCAATCTGTTCGAGGACGAGCCGTCGACGTCGTCGGCGAGCACGAGCCGCCACAACCACCACCATCACACGCACCATCCGCGCGCGTCCAAGGACGACGACGATCCGATCGACTGCCTCAAGCTCAGCGACGACTACATGGACAACACGACCAACCACGACCTGAGCGACGATCTCGATCCGGACACGTGGGCCGACTGCGAGGAGGGCTCCGATTGCGAGGAGATCTGCACGTGCCGGAACGACGACGATGACGACGAGTACGGCGCGTGCAGCAGCAGCAGCGAGGACGAGCTGCCGTCGCGCGACGTCGACCTCTCGAGCTACACCCAGCTCGATCCGATTTCGGACGACATCCTGCAGGACGGCGCGTGCGACGGCACGCCGAAAATCCAGCGAAAACGCAAGCTCACCGAGCAGTCGATGATCCACGTCACCGCCGAGAGCCCCATCGCGCTTGGCGGCAACCGGAAACGCCTCGCGCTTGACACAATCTCGTCGCCGCACGCCAGCCTCGTGACGCCGATCTCGAGTCAAACACTCGCCACGCCAAAGTCGTCAGCTCTCCTCGGCAGCGACAAGCGCACGCCGCGGCTCATTCCGACCAAGGAAAACCCGCCGCCCGATCTAATGGAGTGGCTGCTGACGTTCCAGCGGTGGACGAATGCCGAGCGCTTGGTCGCCGTCGACAAGCTGATCGAGCAGTGCGAGCCGACGCAGGTGCGCTTCATGATGAAGGTGATCGAGCCGCAGTTCCAGCGCGATTTCATCTCACTCCTGCCCAAGGAACTCGCCCTCCACGTGCTCGCCTACCTCGAGCCGAAGGACCTGCTGCGCGCCGCACAAACCTGCCGCAGCTGGCGCTTCCTCGCCGACGACAATCTCCTGTGGAAGGAGAAGTGCCGCACGGCGGGCATCATCTCGGAGTCGTGCCCGGACAAGCCGAAGCGCGGCCGCACCGGAAACATGCCGAAGATTGCGTCGCCATGGAAGGCGGCGTACATGCGACATCACACAATCGAGATGAACTGGCGCTCGAATCCGATCCGGACGCCAAAGATACTCAACGGCCACGACGACCACGTCATCACGTGCCTGCAGTTCAGCGGAAACCGCATCGTCTCGGGCTCGGACGATAATACGCTGAAGGTGTGGTCGGCCGTGACGGGAAAGTGCCTTCGCACGTTGGTGGGACACACGGGCGGCGTGTGGAGCTCACAGATGTCGGGAAATCTCATCATAAGCGGCAGCACGGACCGAACGCTGAAGGTGTGGGACGCCGAGTCGGGCATTTGCAAGCACACTCTCTACGGACACACGTCCACCGTCCGCTGCATGCACTTACATGGAAATAAAGTTGTCAGCGGCAGTCGTGACGCAACGCTCCGCGTGTGGGACATCAACGATGGAACTTGTTTGCACATTCTCGTCGGACACTTGGCAGCGGTGCGGTGTGTGCAATATGATGGAAAATTGGTCGTGTCGGGCGCTTATGATTATCAAGTCAAAGTGTGGAATCCGGAGAGACAGGAATGCCTTCACACGCTTCAGGGCCACACAAATCGTGTGTACTCCCTTCAGTTTGACGGCATCCACGTCGTCTCTGGCTCGCTCGACACCTCGATAAGAGTGTGGGACGCGGAAACGGGCGCACTGAAGCACACGCTGATGGGTCACCAGTCGCTCACGTCCGGCATGGAACTCAAGAACAATATTTTAGTTAGTGGCAATGCCGATTCGACTGTCAAGGTGTGGGACATCATCACGGGCCAGTGTTTGGCTACGCTAGCAGGTCGCAATAAACATCACTCTGCTGTGACGTGTCTTCAGTTCAACAATCGCTTCGTAATCACCAGCTCCGATGATGGCACGGTGAAGCTGTGGGACGTCAAGACCGGCGAATTCATTCGAAATTTGGTGGCATTAGATAGCGGCGGATCGGGAGGAGTTGTGTGGCGCATACGGGCGAATGATACCAAATTGATATGTGCCGTCGGCTCACGAAATGGAACGGAAGAGACTAAATTGATGGTCCTGGACTTTGACATCGAGGGCGCTTGTTTGAAATGTGAAAAA
Protein: 1076 (aa)
MADDECAINKIASDDTFYHDHQRGNDDDGEDEEEIPYDDDENTGTEITITQTVLDSSEIQLETPMETHGISLMALAAAEASGSVVKPKRLSDEFSSLDEEEEEELEDGEGCKRSDDAACCSKSSSIIEREADELDEENSLNPPFLCDKAETSSCISLCFSNSSNNIFNVQSIDDAIERADFESEQKLTGGIIIRAASLTGDEDRLNFDLINNSRRSANNNNNNNMNNISNSNNVSSSSSTSSSSNCNSDEIDAHASTRNDDDGATAAAANDDRIRLSATDDADASGANSRRNEITSTPTSSRCNANDIRNKSTTIRSSSAKQKLSDKYLSIMKNVATATTASASSSMTDCDDHGESSSKSTEKSASLEQQPSVSAAAHSTRNVKINLFEDEPSTSSASTSRHNHHHHTHHPRASKDDDDPIDCLKLSDDYMDNTTNHDLSDDLDPDTWADCEEGSDCEEICTCRNDDDDDEYGACSSSSEDELPSRDVDLSSYTQLDPISDDILQDGACDGTPKIQRKRKLTEQSMIHVTAESPIALGGNRKRLALDTISSPHASLVTPISSQTLATPKSSALLGSDKRTPRLIPTKENPPPDLMEWLLTFQRWTNAERLVAVDKLIEQCEPTQVRFMMKVIEPQFQRDFISLLPKELALHVLAYLEPKDLLRAAQTCRSWRFLADDNLLWKEKCRTAGIISESCPDKPKRGRTGNMPKIASPWKAAYMRHHTIEMNWRSNPIRTPKILNGHDDHVITCLQFSGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMSGNLIISGSTDRTLKVWDAESGICKHTLYGHTSTVRCMHLHGNKVVSGSRDATLRVWDINDGTCLHILVGHLAAVRCVQYDGKLVVSGAYDYQVKVWNPERQECLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDAETGALKHTLMGHQSLTSGMELKNNILVSGNADSTVKVWDIITGQCLATLAGRNKHHSAVTCLQFNNRFVITSSDDGTVKLWDVKTGEFIRNLVALDSGGSGGVVWRIRANDTKLICAVGSRNGTEETKLMVLDFDIEGACLKCEK
| Type | Start | End | Length |
| CDS |
28901 |
29012 |
112 |
| CDS |
29099 |
29270 |
172 |
| CDS |
29326 |
29536 |
211 |
| CDS |
29604 |
29829 |
226 |
| CDS |
30097 |
32603 |
2507 |
| intron |
29013 |
29098 |
86 |
| intron |
29271 |
29325 |
55 |
| intron |
29537 |
29603 |
67 |
| intron |
29830 |
30096 |
267 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_315369 |
AGAP005359-PA [Anopheles gambiae str. PEST] gb|EAA11813.4| AGAP005359-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR001810 |
F-box domain, cyclin-like |
|
| InterPro |
IPR019775 |
WD40 repeat, conserved site |
|
| InterPro |
IPR017986 |
WD40-repeat-containing domain |
|
| InterPro |
IPR001680 |
WD40 repeat |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR020472 |
G-protein beta WD-40 repeat |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00646.28 |
F-box domain |
1.3e-10 |
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
6.4e-57 |
| Pfam |
PF12937.2 |
F-box-like |
6.2e-14 |
| Pfam |
PF11715.3 |
Nucleoporin Nup120/160 |
5e-12 |
| Pfam |
PF13360.1 |
PQQ-like domain |
3.2e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_04364 |
| D. melanogaster |
FBgn0041171 |
| H. sapiens |
ENSP00000377528 |
| B. mori |
BGIBMGA012355-TA |
| A. mellifera |
GB17249-PA |
| H. melpomene |
HMEL008790-PA |
| T. castaneum |
TC006451 |
| C. quinquefasciatus |
CPIJ012122 |
| M. musculus |
ENSMUSG00000028086 |
| A. aegypti |
AAEL011215 |
| C. quinquefasciatus |
CPIJ011984 |
| H. sapiens |
ENSP00000263981 |
| N. vitripennis |
NV10030-PA |
| H. sapiens |
ENSP00000281708 |
| P. vanderplanki |
Pv.06325 |
| H. sapiens |
ENSP00000296555 |
| A. aegypti |
AAEL015522 |
| P. humanus |
PHUM539800-PA |
| D. plexippus |
DPOGS208365PA |
| A. gambiae |
AGAP005359 |