MidgeBase gene description page [Pn.02908]
Outline
| Gene ID | Pn.02908 |
| Type | Protein coding gene |
| Scaffold | PnScaf2507 |
| Start | 8507 |
| End | 9514 |
| Direction | + |
Sequence
Transcript: 546 (bp)
ATGTCATCGACAACAGTAAACCCGCCAGTTATTTGGGCGCAGCGTAACGATGTCCTCTTCGTAACAATCAACGTAGAAACAAAAGATCCTGAAATAAAATTCACAGAGGATTCTCTCCATTTCAAAGGCGTGGGCTTGCCAGAGAACAAAACCTACGAGGTGACGATTAATTTCTATAAGAAAATCAATCCAGACAAAGTTGTGAGTAAAAATAGTGGAAGGTGCATTGAATTTATCATTACCAAAGCCGAGACAAAATCCGAATACTGGCCGTCACTCACCAACGACAAGAAGAAGCCGCATTATCTCAAAGTAGATTTTAACAAATGGAAGGACGAAGGCTCAGACGACGAGGAGGAGCCTGGATTTAACGATGGTTTTGGCGGCATGGGTAACTTTAATGATTTAATGAGCTCGATGGGTGGAGCAGGAGGCATGGGAGGAATGGGAGGTATGGGCGGTGAAGGCAAGCCTTCATTCGACGACCTGGAAGATGAAGAGGACAGCGATGATGAACAGATACCGGACTTGGAGGAGGCGAAGAAG
Protein: 182 (aa)
MSSTTVNPPVIWAQRNDVLFVTINVETKDPEIKFTEDSLHFKGVGLPENKTYEVTINFYKKINPDKVVSKNSGRCIEFIITKAETKSEYWPSLTNDKKKPHYLKVDFNKWKDEGSDDEEEPGFNDGFGGMGNFNDLMSSMGGAGGMGGMGGMGGEGKPSFDDLEDEEDSDDEQIPDLEEAKK
| Type | Start | End | Length |
| CDS |
8507 |
8523 |
17 |
| CDS |
8915 |
8995 |
81 |
| CDS |
9064 |
9511 |
448 |
| intron |
8524 |
8914 |
391 |
| intron |
8996 |
9063 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001849449 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS30238.1| conserved hypothetical protein [Culex quinquefasciatus] |
3e-48 |
| InterPro |
IPR007052 |
CS-like domain |
|
| InterPro |
IPR008978 |
HSP20-like chaperone |
|
| InterPro |
IPR017447 |
CS domain |
|
| Pfam |
PF04969.11 |
CS domain |
4.1e-10 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV17381-PA |
| D. melanogaster |
FBgn0037728 |
| T. castaneum |
TC014013 |
| A. aegypti |
AAEL014943 |
| H. melpomene |
HMEL003352-PA |
| H. sapiens |
ENSP00000262033 |
| H. sapiens |
ENSP00000414892 |
| M. musculus |
ENSMUSG00000071072 |
| D. plexippus |
DPOGS208082PA |
| P. vanderplanki |
Pv.09508 |
| H. melpomene |
HMEL006049-PA |
| A. mellifera |
GB11923-PA |
| C. quinquefasciatus |
CPIJ008199 |
| B. mori |
BGIBMGA006376-TA |
| A. gambiae |
AGAP011157 |
| D. plexippus |
DPOGS210949PA |
| P. humanus |
PHUM504110-PA |
| B. mori |
BGIBMGA007739-TA |