MidgeBase gene description page [Pn.02906]
Outline
| Gene ID | Pn.02906 |
| Type | Protein coding gene |
| Scaffold | PnScaf2507 |
| Start | 5814 |
| End | 7166 |
| Direction | + |
Sequence
Transcript: 1269 (bp)
ATGGCTTCAACGACAGGTGACAAATTCGGTTTGCCAAAGCGCTACCAGGAAGCTTCGGAAAGTGTCTGGGTTGAGTATGTTGCTCTCGCGCTAAAATACAAGCCGTTGAATCTCGGACAAGGCTTTCCCGACTACCCTCCTCCGTCGTACGTCACAAAAGCACTCTCGGATGTCGCGAACGGAGACCACCTGCTGAACCAGTACACACGGGGCTTCGGTCATCCACGTCTTGTGAATGCTCTGGCAAAAGTATATGGACAGCTGATCAACAGAGAAATCGACCCGAACAGAGAGGTTTTGGTGACGGTGGGTGCTTACCAATCGCTTTACAATGCAATTTACGGTCATGTTGACCATGGAGATGAAGTGATAATCATCGAGCCTTTCTATGACTGCTACTACGATATGATTAAGAGCGCCGGCGGCATTCCGCGTGCCATTGCACTGAAACCCTCGAAGAAGGGAATAATCAGCTCGGCTGATTGGAAACTGGATCCGGTCGAGTTCGAGAAGCTCTTTAGCGAGAAGACCAAAATGCTGATTCTCAACACACCGCACAATCCGTTGGGAAAGGTTTTCAACTTGGAGGAACTGACACTGATCGCAGACCTGTGTAAAAAGTGGAACGTCCTCGTTGTGTCCGACGAAGTTTATGAGCATATGGTTTTCGAGCCAAACAAGCACATCCGAATCTGCACCTTGCCTGACATGTGGGAACGAACATTGACTATCGGTAGTGCGGGCAAGACGTTCTCGGCCACAGGCTGGAAACTGGGTTGGACCTACGGGCCGAGCAATTTAATCAGAAACATGCAGTTGGTGCACCAAAATTCGGTCTACACCTGCGCTACGCCTTTGCAAGAGGCAGCTGCCATCGGTTTCGAATACGAGTTGAGTCGATTTAATTCGAGCGAGTCGTTTTTCAAATCATTGGCCGTTGAGCTAAAGGAGAAGCGTGATTTTATGGCAACGTTTTTGACAGAGGCCGGTTTTGAGCCGACTATTCCGGAGGCGGGATATTTTATGATTGCGGACTGGACACACCTTGCCAATAAGGTGGACTTGGAATCTGAAAACGACGAATTCAAGGACTACCGTTTCACAAAGTGGATGACCAAGAATATTTCGTTACAAGGCATCCCACCGAGCGCCTTCTACACAAAACCCCACAAACATTTAGGCGAGAATTTCGTGCGCTATTGCTACATTAAGAAGGACGAGACCCTTCAAAAAGCAGCTGACATTCTCAAGACTTGGTACAAAAAGAAT
Protein: 423 (aa)
MASTTGDKFGLPKRYQEASESVWVEYVALALKYKPLNLGQGFPDYPPPSYVTKALSDVANGDHLLNQYTRGFGHPRLVNALAKVYGQLINREIDPNREVLVTVGAYQSLYNAIYGHVDHGDEVIIIEPFYDCYYDMIKSAGGIPRAIALKPSKKGIISSADWKLDPVEFEKLFSEKTKMLILNTPHNPLGKVFNLEELTLIADLCKKWNVLVVSDEVYEHMVFEPNKHIRICTLPDMWERTLTIGSAGKTFSATGWKLGWTYGPSNLIRNMQLVHQNSVYTCATPLQEAAAIGFEYELSRFNSSESFFKSLAVELKEKRDFMATFLTEAGFEPTIPEAGYFMIADWTHLANKVDLESENDEFKDYRFTKWMTKNISLQGIPPSAFYTKPHKHLGENFVRYCYIKKDETLQKAADILKTWYKKN
| Type | Start | End | Length |
| CDS |
5814 |
5881 |
68 |
| CDS |
5963 |
7163 |
1201 |
| intron |
5882 |
5962 |
81 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001649143 |
kynurenine aminotransferase [Aedes aegypti] gb|EAT44194.1| kynurenine aminotransferase [Aedes aegypti] |
1e-173 |
| InterPro |
IPR001176 |
1-aminocyclopropane-1-carboxylate synthase |
|
| InterPro |
IPR004839 |
Aminotransferase, class I/classII |
|
| InterPro |
IPR015424 |
Pyridoxal phosphate-dependent transferase, major domain |
|
| InterPro |
IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
|
| InterPro |
IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
|
| Gene Ontology(BP) |
GO:0042218 |
1-aminocyclopropane-1-carboxylate biosynthetic process |
|
| Gene Ontology(BP) |
GO:0009058 |
biosynthetic process |
|
| Gene Ontology(MF) |
GO:0016740 |
transferase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0016847 |
1-aminocyclopropane-1-carboxylate synthase activity |
|
| Gene Ontology(MF) |
GO:0030170 |
pyridoxal phosphate binding |
|
| Pfam |
PF01212.16 |
Beta-eliminating lyase |
0.04 |
| Pfam |
PF00155.16 |
Aminotransferase class I and II |
8.2e-57 |
| Pfam |
PF12512.3 |
Protein of unknown function (DUF3717) |
0.11 |
| Pfam |
PF01053.15 |
Cys/Met metabolism PLP-dependent enzyme |
1.2e-07 |
| Pfam |
PF00266.14 |
Aminotransferase class-V |
0.014 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0037955 |
| C. quinquefasciatus |
CPIJ008201 |
| A. mellifera |
GB15834-PA |
| H. sapiens |
ENSP00000317342 |
| A. aegypti |
AAEL004435 |
| H. sapiens |
ENSP00000399415 |
| A. gambiae |
AGAP011158 |
| P. humanus |
PHUM210690-PA |
| H. sapiens |
ENSP00000359517 |
| H. sapiens |
ENSP00000390377 |
| B. mori |
BGIBMGA007921-TA |
| M. musculus |
ENSMUSG00000040213 |
| T. castaneum |
TC011119 |
| M. musculus |
ENSMUSG00000039648 |
| H. sapiens |
ENSP00000359522 |
| H. sapiens |
ENSP00000260508 |
| H. sapiens |
ENSP00000302227 |
| H. melpomene |
HMEL015088-PA |
| D. plexippus |
DPOGS208814PA |
| N. vitripennis |
NV15933-PA |
| P. vanderplanki |
Pv.09506 |
| S. invicta |
SI2.2.0_05764 |
| H. sapiens |
ENSP00000359516 |