MidgeBase gene description page [Pn.02809]
Outline
| Gene ID | Pn.02809 |
| Type | Protein coding gene |
| Scaffold | PnScaf2423 |
| Start | 10758 |
| End | 11732 |
| Direction | - |
Sequence
Transcript: 891 (bp)
ATGAATTCGTACACAATCAGCAGAGGACGCTACGTTAACGACAGTGCACGGATCGATGGCAAGATCGTGATTGTGACGGGATGCAATACGGGCATTGGCAAGGCGGCCGCTCTCGAGCTAGCGAAGCGTGGCGCTAAAATTTATTTCGCGTGTCGGAGCGAGTCGAAGGCAATGGAAGCGCTGAACGAAGTCAGGGAATTGTCGAGCAATGACAACCTTCATTTCTTACAACTTGATTTGGGTTCGCTCGATTCGGTGCGGGAGTTTTCGAGACAGTTCCACGACCTGGAGACGCGTCTAGACATTTTGGTGAACAATGCGGGCGTTCTGTCGCCTCTCGTTAAGACTATCGATGGCTTCGAGACGAACATCGGCGTCAACCACTTGGGTCACTTTTTGCTCACCAATCTGCTGCTGGATTTGCTGAAGGCAGCGGCTCCAAGCCGAATTATCGTCGTCTCGTCGACGCTCCACAAAATCGGATCGATTAAGAGAGACGACTTCAACAGCGAGAAGAGTTTCCCGGGCACTTGGGTCGGCTACGGGACCAGCAAACTCTGCAACATGCTCTTCATGCGAGAACTGGCGAGGAAGCTGGATGGCACGGGCGTGACTGTGAACGCTCTGTGCCCGGGCGCTGTCAACAGCGAGGCGACTCGTTACCTCAATCCCTTCGTCAAATTCCTCATGAATCCGATCATGAAAGTCTTCTACAAATCGCCCGAGATTGGCTGTCAAACGATTTTGATGTTGAGCGTTGAACCGTCGCTCGCAGGTGAAACGGGCGGTTATTATGTTGACTGCAAGAAAGTCGAACCGAGCAATAATGCTAAGGACGACGACAATGCGAAGTGGCTGTGGGAGAAGAGCGCTGAGCTGACAGGACTGAAA
Protein: 297 (aa)
MNSYTISRGRYVNDSARIDGKIVIVTGCNTGIGKAAALELAKRGAKIYFACRSESKAMEALNEVRELSSNDNLHFLQLDLGSLDSVREFSRQFHDLETRLDILVNNAGVLSPLVKTIDGFETNIGVNHLGHFLLTNLLLDLLKAAAPSRIIVVSSTLHKIGSIKRDDFNSEKSFPGTWVGYGTSKLCNMLFMRELARKLDGTGVTVNALCPGAVNSEATRYLNPFVKFLMNPIMKVFYKSPEIGCQTILMLSVEPSLAGETGGYYVDCKKVEPSNNAKDDDNAKWLWEKSAELTGLK
| Type | Start | End | Length |
| CDS |
10761 |
11643 |
883 |
| CDS |
11725 |
11732 |
8 |
| intron |
11644 |
11724 |
81 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663677 |
short-chain dehydrogenase [Aedes aegypti] gb|EAT34252.1| short-chain dehydrogenase [Aedes aegypti] |
4e-80 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
2.3e-05 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
2.8e-08 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
6.5e-06 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
2.4e-19 |
| Pfam |
PF08659.5 |
KR domain |
2.6e-06 |
| Pfam |
PF12242.3 |
NAD(P)H binding domain of trans-2-enoyl-CoA reductase |
0.00061 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.09662 |