MidgeBase gene description page [Pn.02793]
Outline
| Gene ID | Pn.02793 |
| Type | Protein coding gene |
| Scaffold | PnScaf2421 |
| Start | 37488 |
| End | 49371 |
| Direction | - |
Sequence
Transcript: 2988 (bp)
ATGATGGCCAACCTAAATGGCGCGTCGTCGGCGATGGCGGGAGCGGGTCAGGAGAAGGAGACGACCGCCATCGCCATGGCAGCGACCGGCGACGAGCTGCAGAAGGTGAACGAATTTTTCGAGGCGAACTCGGGCGCCATCGAGCGGTGGCTGAAGGAGAGGGCCAGCGAGGACGTGATAAATCGCCTGAACGGCATCATTCGGAACAAGGAGCGCGCCGTGGAGCGCGAGCAGCAACACAGGTCGTCCGTCACTTCCGAGCTCTACCAACAGTGGCTGTCATCGTCGATGAAGCAAAGCACATCGTCAAGCTCCAGCGAGACTCGCAAAAGTTTAGCACAATTAGATGAGGGAGAGTTATTTATGGAACTCATAAAAGATATCGCAAATGAATTAGATATCGATGTACTATGTCATAAGATACTTGTAAATGTTGAATTGCTAACACATGCCGATAGGGGATCGCTCTTTCTAGTTAAGGGAAACTCAACGCAAACGCGCTATCTGCATGCGAAGCTCTTTGACGTGTGTCAGGATACGGCTCTTGATGATGCAATTAAACGTGCGAAAGCGGAAGAAATTGTCATTCCGTTTGGCGTTGGCATCGCGGGGAACGTCGCCGAAACGAAGGAAATGGTGAACATAAAAGATGCGTACAACGATCCGCGTTTCAACTGTGAAATCGATCAAAAGACTGGCTATAAAACAAACAATATTCTATCATTACCGATCTGTAACTACGAGGGCGAGGTCATTGGCGTAGCTCAAATCATAAACAAGACAAATGGTCAGGACGAGTTTACGGAACGTGACGTGGAGGTGTTTAAGCGTTATCTCACATTCTGCGGCATAGGCATCCAGAATGCGCAGCTCTTTGAGAACAGTGTCCTCGAGTACCGACGCAATCAGATTCTGCTTAATTTGGCGCGCAGCATTTTCGAGGAGCAAAACAACCTCGAGTGTCTCGTGACGAAAATAATGAGAGAGGCGAGAGACTTGCTGAAATGTGAACGATGCGCCGTCTTTCTAGTTGATTTGGAGTGCTGTGAGGCGAGCCACTTGGAGCGAATGCTTAAATCAACTAATCAAATTGATTATGAGGAGAGCAGCAATAATCCCTACAATAATGCATCGAAAAAGGGAAGTGACGATAGCAACTCATCAAATGGCCGTCCGACCGTAGAAGATATTAATAGTTCGTACTTAGCTCAGATAGCGCAGCACGTCGCCAAGACCGGCGAGATTCTCAACATCAACGACACGATGGAGTGGCTGAGAAATCACCCCGAGTATCACATCAACAGCATCGGCGAGGAGATCCCGCAGGAGTCGAAGTGTATCCTCTGCATGCCCATCATGAACGGCCAGAAGGACGTCATCGGCGTGCTCGTGTACGTGCACGCGAACGGCGTTCAATTCACAAATTGCGAAATCTCCATTTTCGAAGCGTTTGCAATTTTCTGCGGCTTGGGAATTCATAATACAACAATGTATGAAAGCGCCTGCAAGCTGATGGCGAAGCAAAAAGTGGCTCTCGAGTGTCTCTCATATCATGCAACCGCATCGCAAGAGCTGACGAGGAAATTGGCAAGCGAACCCATCAAGAGTGCGCAGGAATACAAACTCTATTGCTTCAAATTCATCGATTTTGAATTATCGGAGGAAGAGACGTGTCGTGCGACGATAAGAATGTTCGTCGATTTCAACCTGCTCGGGCAATTCAACATTCCGTACGAGGTCCTGTGTCGATGGATATTGAGCGTGAAAAAGAATTATCGACCCGTTAAGTATCATAATTGGAGGCACGCGCTGAACGTCTGCCAGACGATGTTCGCGATGATGAAGACCGGCAAGATGGAGCGGTTTATGAAGGATCTCGAGATACTCGGTCTGCTCGTTGCCTGTCTCTGTCACGATCTCGATCACATGGGCACGAACAATGCCTTCCAAGTGAAGACAAACTCGCCGCTGGGAATTCTCTACACGACCAGCACAATGGAGCACCATCACTTCGATCAGTGCGTCATGATTCTCAACTCGGAAGGAAACAACATCTTTCAGGCTCTCTCGCCCGAGGATTATCGCTATGTCATGAACGTCGTGGAGAAGGCCATTCTGTCGACCGATTTGGCGATGTACTTTAAGAAGCGGGACAAGTTCCTCGACTTGATCGATAATGGCGAGTTCGACTGGCAGAGCGACGAGAAGAAGGAGCTTCTATGCGGCATGATGATGACAGCTTGTGATGTGAGTGCGATAGCGAAGCCGTGGGAGGTTCAACATCGCATCGCGAAGCTCGTGGCCGACGAGTTCTTCGACCAGGGCGACTTGGAGAAGCTCCAGCTGAACACGCAGCCCGTCGCGATGATGGATCGCGAGCGAAAGGACGAGTTGCCGAAGATGCAGGTCGGCTTCATTGACGTCATCTGCATGCCGCTGTACAAGGTGCTGTCCGAGACTTTCCCGTGGATTTCGCCGCTCTACGAGGGCACCATGGAGAACCGTCAGCACTGGCAGGATCTGGCCGAGAAGGTCGAAATGGGACTGACGTGGATCGATCACGACACCATCGAGCAGCCGATTGAGGAGCTCGCCGCTAACGCTAATGAAATAGGCGACATTGAGTTCACCGTATGCGAGCTAAACTGTAGTAACAACGCACAGCAAAGCGAGGAGCAAACGTCGCCGGTGCACGAGCGAAAGCCACGATTCAGCAGCTTCAAGAAGAGCGGCGCCCTCTCAAAGGCCGTGCGCAGCAAACTGAACCTCTCGAAGTCGTCGACGCAATCGACCGAGAAGCAGAACAGCTGCGGCGAGAGCAGCTCTTTCGACCACGAGCACAAGCAGGAGAGCGTCAGTGCAGAGAACGGCGGAGGAGGTGGCGGCGCCGCCAAAGTCGACGCCACGCAAGAGCAATCAAGTGCGGCCGCGAACAAAGCACCGCCGACAAAAGTAACGAAGAAAAAGTCGAAGCTCTGCCTGCTCTTA
Protein: 996 (aa)
MMANLNGASSAMAGAGQEKETTAIAMAATGDELQKVNEFFEANSGAIERWLKERASEDVINRLNGIIRNKERAVEREQQHRSSVTSELYQQWLSSSMKQSTSSSSSETRKSLAQLDEGELFMELIKDIANELDIDVLCHKILVNVELLTHADRGSLFLVKGNSTQTRYLHAKLFDVCQDTALDDAIKRAKAEEIVIPFGVGIAGNVAETKEMVNIKDAYNDPRFNCEIDQKTGYKTNNILSLPICNYEGEVIGVAQIINKTNGQDEFTERDVEVFKRYLTFCGIGIQNAQLFENSVLEYRRNQILLNLARSIFEEQNNLECLVTKIMREARDLLKCERCAVFLVDLECCEASHLERMLKSTNQIDYEESSNNPYNNASKKGSDDSNSSNGRPTVEDINSSYLAQIAQHVAKTGEILNINDTMEWLRNHPEYHINSIGEEIPQESKCILCMPIMNGQKDVIGVLVYVHANGVQFTNCEISIFEAFAIFCGLGIHNTTMYESACKLMAKQKVALECLSYHATASQELTRKLASEPIKSAQEYKLYCFKFIDFELSEEETCRATIRMFVDFNLLGQFNIPYEVLCRWILSVKKNYRPVKYHNWRHALNVCQTMFAMMKTGKMERFMKDLEILGLLVACLCHDLDHMGTNNAFQVKTNSPLGILYTTSTMEHHHFDQCVMILNSEGNNIFQALSPEDYRYVMNVVEKAILSTDLAMYFKKRDKFLDLIDNGEFDWQSDEKKELLCGMMMTACDVSAIAKPWEVQHRIAKLVADEFFDQGDLEKLQLNTQPVAMMDRERKDELPKMQVGFIDVICMPLYKVLSETFPWISPLYEGTMENRQHWQDLAEKVEMGLTWIDHDTIEQPIEELAANANEIGDIEFTVCELNCSNNAQQSEEQTSPVHERKPRFSSFKKSGALSKAVRSKLNLSKSSTQSTEKQNSCGESSSFDHEHKQESVSAENGGGGGGAAKVDATQEQSSAAANKAPPTKVTKKKSKLCLLL
| Type | Start | End | Length |
| CDS |
37491 |
37882 |
392 |
| CDS |
38073 |
38421 |
349 |
| CDS |
38598 |
38629 |
32 |
| CDS |
40090 |
40243 |
154 |
| CDS |
40339 |
40494 |
156 |
| CDS |
41078 |
41192 |
115 |
| CDS |
41283 |
41335 |
53 |
| CDS |
41465 |
41556 |
92 |
| CDS |
42141 |
42286 |
146 |
| CDS |
42402 |
42410 |
9 |
| CDS |
42645 |
42994 |
350 |
| CDS |
44507 |
44593 |
87 |
| CDS |
45011 |
45210 |
200 |
| CDS |
45298 |
45363 |
66 |
| CDS |
45447 |
45692 |
246 |
| CDS |
46246 |
46492 |
247 |
| CDS |
49078 |
49371 |
294 |
| intron |
37883 |
38072 |
190 |
| intron |
38422 |
38597 |
176 |
| intron |
38630 |
40089 |
1460 |
| intron |
40244 |
40338 |
95 |
| intron |
40495 |
41077 |
583 |
| intron |
41193 |
41282 |
90 |
| intron |
41336 |
41464 |
129 |
| intron |
41557 |
42140 |
584 |
| intron |
42287 |
42401 |
115 |
| intron |
42411 |
42644 |
234 |
| intron |
42995 |
44506 |
1512 |
| intron |
44594 |
45010 |
417 |
| intron |
45211 |
45297 |
87 |
| intron |
45364 |
45446 |
83 |
| intron |
45693 |
46245 |
553 |
| intron |
46493 |
49077 |
2585 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_312997 |
AGAP004119-PA [Anopheles gambiae str. PEST] gb|EAA08620.5| AGAP004119-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR002073 |
3'5'-cyclic nucleotide phosphodiesterase, catalytic domain |
|
| InterPro |
IPR023174 |
3'5'-cyclic nucleotide phosphodiesterase, conserved site |
|
| InterPro |
IPR023088 |
3'5'-cyclic nucleotide phosphodiesterase |
|
| InterPro |
IPR003607 |
HD/PDEase domain |
|
| InterPro |
IPR003018 |
GAF domain |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0004114 |
3',5'-cyclic-nucleotide phosphodiesterase activity |
|
| Gene Ontology(MF) |
GO:0008081 |
phosphoric diester hydrolase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF13185.1 |
GAF domain |
3.8e-17 |
| Pfam |
PF13492.1 |
GAF domain |
1.1e-20 |
| Pfam |
PF01590.21 |
GAF domain |
9.3e-43 |
| Pfam |
PF01966.17 |
HD domain |
0.0069 |
| Pfam |
PF00233.14 |
3'5'-cyclic nucleotide phosphodiesterase |
4.3e-78 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS208448PA |
| T. castaneum |
TC005521 |
| H. sapiens |
ENSP00000416884 |
| H. sapiens |
ENSP00000351232 |
| P. vanderplanki |
Pv.13795 |
| P. humanus |
PHUM361080-PA |
| S. invicta |
SI2.2.0_00589 |
| H. sapiens |
ENSP00000374333 |
| H. sapiens |
ENSP00000390599 |
| D. plexippus |
DPOGS208447PA |
| C. quinquefasciatus |
CPIJ016085 |
| P. humanus |
PHUM497020-PA |
| H. melpomene |
HMEL013962-PA |
| M. musculus |
ENSMUSG00000053965 |
| P. vanderplanki |
Pv.12360 |
| A. mellifera |
GB18775-PA |
| H. melpomene |
HMEL017888-PA |
| H. sapiens |
ENSP00000425810 |
| B. mori |
BGIBMGA008851-TA |
| A. aegypti |
AAEL013747 |
| H. sapiens |
ENSP00000377957 |
| H. sapiens |
ENSP00000347046 |
| D. melanogaster |
FBgn0038237 |
| B. mori |
BGIBMGA000060-TA |
| C. quinquefasciatus |
CPIJ006988 |
| P. humanus |
PHUM066610-PA |
| A. gambiae |
AGAP008646 |
| T. castaneum |
TC011654 |
| S. invicta |
SI2.2.0_16524 |
| N. vitripennis |
NV50011-PA |
| A. aegypti |
AAEL017031 |
| A. aegypti |
AAEL004520 |
| H. sapiens |
ENSP00000264805 |
| H. sapiens |
ENSP00000286063 |
| D. plexippus |
DPOGS206191PA |
| A. mellifera |
GB19645-PA |
| C. quinquefasciatus |
CPIJ006990 |
| D. melanogaster |
FBgn0085370 |
| P. vanderplanki |
Pv.14388 |
| A. gambiae |
AGAP004119 |
| H. sapiens |
ENSP00000386539 |