MidgeBase gene description page [Pn.02783]
Outline
| Gene ID | Pn.02783 |
| Type | Protein coding gene |
| Scaffold | PnScaf2415 |
| Start | 352 |
| End | 4387 |
| Direction | - |
Sequence
Transcript: 1002 (bp)
ATGCCTTTGAAGGTATGGTTCAAGAACAGACGCGCGAAATGCCGCCAGCAGCTGCAACACCAGACCTCATCGTCGTCCTCGAATCTCAACAGTTCAAAATCGTCGTCGAACGCGTCGACGCGCAACGGCAACTCATCGTCGGCGTCGGCCTCGTCGTCGTCCGCGAGCAAGACGACCAACACCGCGAGCAACTCGACCAACAATAGCGCGAGCGGCGCCAAGTCCTCGCACATCAAGGTGACGCCGACGCACGCCTTGTCCGCCAATCCCAACAACAACAACAACAACTCGGGCAACTCCAACAACAACAACAACAGCAACACATCGAACGGCACGAGCGCGACGTCGAACGCGGTCAACAGCAGCCTGGGGGCGCTGAGCAGCAGCAACCACCACTCGACGTCCTCGCCCATCCTGCCGATCACGCCGTCGACGTCGGTGAGTCCGCCGATCAACGTCATCTGCAAGAAGGAGCTGCCGTATCACCACCAGAATGGCCTCGGCTCGCACCAGGCCATCAACAACGGCTCGATGGACGTGAAGCCGGGCTCGGGCGGCAGCTCCGGCTACGACAGCCTCAAGGACAGCGACCTCGGCCTCACGTCCGTCCATCACGCCTCGTATCTCAACATCAACTCGCGCTTGAGCCAGACCGGCGGCAACCTCACGCCGCTCGGCTCCAACTCCTCCATCATGACGACGCCGTCGCCGCCGATCACGCCGCAGGCCAGCGGGCCGCTCTCCTACGTCCCCAACCACGAGTCCTACAACTTCTGGCACAACCAGTACAACCAGTACAATCCCAACAACTACAACACGCCGTCATACTACACGCAGATGGACTACTTCAACAACCAGAGCCAGTCGGGCTACAACATGAGCCACTCGGGGTATTCGACGTCGAATTTCGGGCTGTCGGGCGGCGCCATGAGCGGCGCGATGGCCTCGCAAACCTTCTCGTCCGACTACATGACACAGCAAGATAAATATGTGAATATGGTA
Protein: 334 (aa)
MPLKVWFKNRRAKCRQQLQHQTSSSSSNLNSSKSSSNASTRNGNSSSASASSSSASKTTNTASNSTNNSASGAKSSHIKVTPTHALSANPNNNNNNSGNSNNNNNSNTSNGTSATSNAVNSSLGALSSSNHHSTSSPILPITPSTSVSPPINVICKKELPYHHQNGLGSHQAINNGSMDVKPGSGGSSGYDSLKDSDLGLTSVHHASYLNINSRLSQTGGNLTPLGSNSSIMTTPSPPITPQASGPLSYVPNHESYNFWHNQYNQYNPNNYNTPSYYTQMDYFNNQSQSGYNMSHSGYSTSNFGLSGGAMSGAMASQTFSSDYMTQQDKYVNMV
| Type | Start | End | Length |
| CDS |
355 |
1344 |
990 |
| CDS |
4376 |
4387 |
12 |
| intron |
1345 |
4375 |
3031 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR25158 |
hypothetical protein AND_09765 [Anopheles darlingi] |
1e-68 |
| InterPro |
IPR001356 |
Homeodomain |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF11698.3 |
V-ATPase subunit H |
0.043 |
| Pfam |
PF03999.7 |
Microtubule associated protein (MAP65/ASE1 family) |
5.9 |
| Pfam |
PF12722.2 |
High-temperature-induced dauer-formation protein |
2.9 |
| Pfam |
PF00046.24 |
Homeobox domain |
0.01 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL002740 |
| C. quinquefasciatus |
CPIJ006790 |
| P. vanderplanki |
Pv.03646 |
| A. gambiae |
AGAP000215 |
| D. melanogaster |
FBgn0004102 |