MidgeBase gene description page [Pn.02770]
Outline
| Gene ID | Pn.02770 |
| Type | Protein coding gene |
| Scaffold | PnScaf2386 |
| Start | 18287 |
| End | 20101 |
| Direction | + |
Sequence
Transcript: 834 (bp)
ATGTCTGGTCACAAAATTCCAATCAAACGAAAAGACTTGAACGGTTCATCAACATCGTCGAATTCATCGATATCGGAAAGCGGAACAGATCTCGCGTCGCTCTTTGAATGTCCAGTTTGTTTTGATTACGTTCTACCACCGATTCTTCAATGCCAGATGGGACACTTGGTCTGCTCAAGCTGTCGCTCAAAATTAACGTGCTGTCCAACTTGTCGCGGATCATTGGGAAACATTAGAAATTTGGCCATGGAAAAAGTTGCTTCAAATGTCAAATTTCCATGCAAACACTCAAACAATGGCTGTGCTGCTTCGCTCGTATACACGGAAAAGGTCGAACATGAAGAGATTTGCGAGTTTCGCCCCTACTTATGTCCCTGTCCAGGAGCCAGCTGCAAGTGGCAAGGCTCTCTTGATTCTGTCATGCCGCATCTTATTATGCATCACAAGAGCATAACGACTTTGCAAGGCGAAGACATCGTATTCCTCGCGACAGACATTAATCTGCCGGGAGCGGTGGACTGGGTGATGATGCAGTCATGCTTCGGCCACAACTTCATGCTCGTGCTCGAAAAGCAGGAAAAGTTCGACGGTCATCAGCAATTTTTCGCCATAGTACAATTAATCGGATCGCGAAAGGAGGCCGAGAACTTTGCCTATAGACTCGAGCTGAACGGAAATAGGCGCCGCCTCACATGGGAAGCTATGCCTAGAAGTATACACGAAGGAATCAGTAGTGCCATCCTAAACAGTGACTGCTTGGTTTTCGACACATCGATAGCGCAACTGTTTGCCGATAACGGAAATCTGGGAATCAACGTGACAATTTCTCAGGTG
Protein: 278 (aa)
MSGHKIPIKRKDLNGSSTSSNSSISESGTDLASLFECPVCFDYVLPPILQCQMGHLVCSSCRSKLTCCPTCRGSLGNIRNLAMEKVASNVKFPCKHSNNGCAASLVYTEKVEHEEICEFRPYLCPCPGASCKWQGSLDSVMPHLIMHHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHNFMLVLEKQEKFDGHQQFFAIVQLIGSRKEAENFAYRLELNGNRRRLTWEAMPRSIHEGISSAILNSDCLVFDTSIAQLFADNGNLGINVTISQV
| Type | Start | End | Length |
| CDS |
18287 |
18795 |
509 |
| CDS |
19774 |
20098 |
325 |
| intron |
18796 |
19773 |
978 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001688791 |
AGAP006127-PA [Anopheles gambiae str. PEST] gb|EDO63797.1| AGAP006127-PA [Anopheles gambiae str. PEST] |
1e-139 |
| InterPro |
IPR008974 |
TRAF-like |
|
| InterPro |
IPR013010 |
Zinc finger, SIAH-type |
|
| InterPro |
IPR001841 |
Zinc finger, RING-type |
|
| InterPro |
IPR018121 |
Seven-in-absentia protein, TRAF-like domain |
|
| InterPro |
IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
|
| InterPro |
IPR013323 |
Seven In Absentia Homolog-type |
|
| InterPro |
IPR004162 |
Seven-in-absentia protein, sina |
|
| InterPro |
IPR013322 |
TRAF-type |
|
| Gene Ontology(BP) |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
|
| Gene Ontology(BP) |
GO:0007275 |
multicellular organismal development |
|
| Gene Ontology(BP) |
GO:0016567 |
protein ubiquitination |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0004842 |
ubiquitin-protein ligase activity |
|
| Pfam |
PF13923.1 |
Zinc finger, C3HC4 type (RING finger) |
0.005 |
| Pfam |
PF03145.11 |
Seven in absentia protein family |
7.2e-76 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0003410 |
| A. gambiae |
AGAP006127 |
| H. sapiens |
ENSP00000369343 |
| H. sapiens |
ENSP00000378214 |
| T. castaneum |
TC001774 |
| P. humanus |
PHUM333800-PA |
| P. vanderplanki |
Pv.17015 |
| C. quinquefasciatus |
CPIJ009247 |
| S. invicta |
SI2.2.0_09755 |
| M. musculus |
ENSMUSG00000040749 |
| M. musculus |
ENSMUSG00000036840 |
| H. sapiens |
ENSP00000456421 |
| B. mori |
BGIBMGA002878-TA |
| N. vitripennis |
NV13902-PA |
| A. aegypti |
AAEL009614 |
| D. plexippus |
DPOGS206719PA |
| H. melpomene |
HMEL005143-PA |
| A. mellifera |
GB14982-PA |
| H. sapiens |
ENSP00000349156 |