MidgeBase gene description page [Pn.02730]
Outline
| Gene ID | Pn.02730 |
| Type | Protein coding gene |
| Scaffold | PnScaf2335 |
| Start | 144 |
| End | 1537 |
| Direction | + |
Sequence
Transcript: 972 (bp)
ATGACGTCCGTCATCATGGTGTTCCACAACGAGCCGCTCTCGATGATTCTGCGCTCGGTTTTTGCCGTTTTCAAGCGAACGTCGGAGCGGCTGCTCAAGGAGATTGTCCTCGTCGACGACTGCAGCACGCATGCGAACCTCCAGCAGCCGCTCGAGGACTTCATCGCCCCGTACAAGAAGGTGCGGCTGGTGCGGATCCCGATCCGGGTGGGGCTGATCAGGGCGCGCATGTACGGCTGCGTGAACGCGCAGGGGCCGGCGCTCGTGTTCATGGACGCGCACGTGGAGGTGACGGCGGGTTGGCTCGAGCCGCTGCTAGACCCGCTCGTGCGCAACAACCTCTCGGCCACCGTGCCGGTGGTGGACGGTCTGGACGCGCAAACGCTCGCGTACAAGTACAATCCCAACCCGGAGACGTACATGGTGGGCGGCTTCCGCTGGAACCTCATCTACGAGTGGATTCCCATCCGGAGGGAGGAGCGCGAGCGGATGGGCCACCCCTGCGCGCCCATCCGCACGCCCACCATGCTCGGCGCCTTCTTCGTCATCATGAAGGCGAACTTCCTGCGCGTCGGCATGTACGACGAGGAGTACGAGACGTGGGGCGCCGAGAACCTCGAGCTCAGCTTCAAGGTGTGGATGTGCGGCGGCGAGATGTACCAGGTGCCGTGCAGCCACGCCGCACACATGTTCCGCAAGAAGCATCCCTACTCGTTTCCAGGCGGCGGAGGCGAAGTGCGACGAAACACCGACAGGCTGGCGCACGTGTGGCTGCAGGACTACAAGAGGTTCTATTTTCGGGCGACGAACTTCAACGGGCGCGATTTCGGCGACATCAGCAAGCAGGTGAAGTTGCGGGAGAGCATCGGCTGCAAGAGCTTCCAGTGGTACCTCGAGAATGTCTATCCCGATGTCAAGTACGACGATCGAATCACCGACCCGCCGCCCGCTGCTGGCGCCATTCAGAAGGAG
Protein: 324 (aa)
MTSVIMVFHNEPLSMILRSVFAVFKRTSERLLKEIVLVDDCSTHANLQQPLEDFIAPYKKVRLVRIPIRVGLIRARMYGCVNAQGPALVFMDAHVEVTAGWLEPLLDPLVRNNLSATVPVVDGLDAQTLAYKYNPNPETYMVGGFRWNLIYEWIPIRREERERMGHPCAPIRTPTMLGAFFVIMKANFLRVGMYDEEYETWGAENLELSFKVWMCGGEMYQVPCSHAAHMFRKKHPYSFPGGGGEVRRNTDRLAHVWLQDYKRFYFRATNFNGRDFGDISKQVKLRESIGCKSFQWYLENVYPDVKYDDRITDPPPAAGAIQKE
| Type | Start | End | Length |
| CDS |
144 |
276 |
133 |
| CDS |
434 |
1014 |
581 |
| CDS |
1277 |
1534 |
258 |
| intron |
277 |
433 |
157 |
| intron |
1015 |
1276 |
262 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EHJ72323 |
putative UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase [Danaus plexippus] |
3e-82 |
| InterPro |
IPR001173 |
Glycosyl transferase, family 2 |
|
| InterPro |
IPR003859 |
Galactosyltransferase, metazoa |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0016757 |
transferase activity, transferring glycosyl groups |
|
| Pfam |
PF02709.9 |
N-terminal domain of galactosyltransferase |
2.1e-07 |
| Pfam |
PF00535.21 |
Glycosyl transferase family 2 |
4.6e-24 |
| Pfam |
PF10111.4 |
Glycosyltransferase like family 2 |
6e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06430 |