MidgeBase gene description page [Pn.02706]
Outline
| Gene ID | Pn.02706 |
| Type | Protein coding gene |
| Scaffold | PnScaf2322 |
| Start | 43607 |
| End | 47587 |
| Direction | + |
Sequence
Transcript: 2685 (bp)
ATGACAATGACGACAACAGCAAAGAAGAATTCACCGTCATCGTCGACGACAGATGTTAGAAGGAGTTCATCATCGTCATTGGAAGCGGGCGAGGAAATAGAGTACATTGCGAAGCAGATATCGGATCATGCTGAAGCCATCTACCAGGAGTGGAAAGCGCGAGGTTTAGCACCGTCCGAGATACTCAAATGTCATCCCGACACTGACAAAAAATTCAATTCGACCTTAAGCCCGTTAGTCTCACCGTCGAAACCTGTCCTCAATTTCGCTCCCTCCGAACTCTTGGCGAACGACGCGAATCTCTCGAACAGTAATTTAAAGCAATTAGTTAACACATTTGTAAACGAGGATAAGGCCCGAATCGCGGCGACTGGCGGAAAGTACACAAACAAGCGCGTAGAAAATTTTGCACAATCGTCAACAAAGGCAGCTGAGAGTAGTCAACAGAGAGGCAGCAACAATACTACTAGCAATACAAAGTTTGCACTCGACGAGTCCCTGCAGAATTATCAAGTGCCAGACGTTCTGCGAGACACTATCGAGAAATGTTCTAAACTAGAGAAACCTAAGACACAGCCTAAACCAGATCACCTTTTAAACTGGCCATTTAAATACCGTAATGTAATAAATAATAATAGTAGCGGCGGCAGCATCAATAATAGCAGTAATCCGACAAGTACGAAAAGTGAGGAAAAATCGGCGACTTCACCTTTATCATTTCCGTCTACGTCCGATTATGTCGATAATTCGAGTAGAAAATCCAATATAATGGTGGAGGTTTCGCGCGAAGAGGAGAAACTAATCAATGCACTCAAAACCGGAGCCGTTCTGAATAATGAGCCGAGCGTTGTGCTTCCCGAAGTAATTATGTCTTCACTCAACGAGTATAAAGTTCAAGCTGAGCAGCAGCTCAATGGAATTGCATCAGTAATTAAGGAGAATAGCGTCAGCATCATCAACAACAACAACAACAGCAGCGGCAAGAGTAAAATGGAAAGTGTCGACTCGACTGACTCGTCGTCGCAACCGCAATTGCCGCACAAGCCCAATCATACTCCGATATTTGTTCCCCAAATCAAAGATGAGGCGAGAATCGAGAAGGGCGTCTCGAATTTCACGCGCGTCGCGACCACAAGAATACCTCATCGGCACGACTTGTCCAAGTTCGACGAGAAGAAGTTTGAGCTCAAAAGCATACCTAGTCCCGTGCGACCGTTCCTCAGTCGCGGATCTGTTGCCGAGCGCGTATTAATTTTCGAGAAGTGCCCCGAAAAGACGCCCATCCGACAACCGACAGAGAAACCAAAAATACAGGCGAAGCCCGTTAACAAAATATTTCCACCGCTCCACTCGACCCTGCAACGACACTTACGGCGATCCACCAACTTTACAATTCCACAATTCTATTTTCCAAATGGCAAACCTCCGCCATCGATAGCAACAGAGACGACCGTTCAGAGGTTGGAGCTCGTCTTTGATCAGTTCGAGAATTATGAGATACCTCGTGATAAATTTCACATTGTCGTTACCGTTTGTCAAGTACCGCTTTATTGGAGAGTGCCATTATTTATGTGTACGCAACTGACGCCGACAGGTTGTGTTAATGGAAATAAATTTCTCGACTTTTGGCGACAGATGACGAGTTCGTGTCACGACGCAGCGTCACGTTTTATTCATATCATATCGCGCGCCAACAAATCACGTCCCTTTATCATGCCCGAGGACCTCGCGCCCCTCATTCAGGACGTCGTCGACTCGCACCCGGGTCTAGCATTTCTGAAGGAGGCGTCGGAGTTTCACTCGCGCTACGTGCACACGGTCATCGCGCGAATATTCTACACCGTGAACCGGAGCTGGTCTGGCCGGATTACGGCGAGCGAGTTGAGGCGATCGAATTTCTTGGACGTCATTCAGCTGCTCGAGGAGGAGGAGGACATCAACCAGATTATGGCGTACTTCAGCTACGAGCACTTCTACGTTATTTATTGTAAATTTTGGGAGCTGGACCGAGACCATGACTTGTTCATCGATCAGCAAGATCTAGCTCGACATAACGACCACGCGCTGTCGTCTCGAATCATCGAGCGAATATTTTCCGGTTGTGTTACGCGCGGTCGTAGTAAAAATGGCAAGAGTGAGAATGGGACGCATGCAATAACCCGAATGTCCTACACAGACTTTGTGTGGTTCCTGCTGGCCGAGGAGGACAAAATGCAGCCGACCGCCATCGAATACTGGTTCCGATGCATGGACATTGACGGTGACGGAGTGCTGTCGATGTACGAGCTCGAGTACTTCTACGAGGAGCAGCAGCATCGCATGGAGCAGCTAGGAATTGAAACTCTGCCCTTCGAAGATTGCCTCTGTCAAATGCTCGACATGATCAAGCCGGTCAAGAGGAACTGCATCACGCTCAGCGACTTGAAGCGCTGCAAAATGACGCCCATCTTTTTCGACACGTTCTTCAATCTGGAGAAGTACATGGAGCATGAGCAGCGTGATCCGTTCGCGCAGAAAGAAAACGACGAGCTGACCGATTGGGACCGATATGCTGCGACAGAATATGAATTATTAGTCGCTGAGGAAAGCAATGACGGAAATGGATTCGAGGATGGAGGTGACGACTACGAAACCAACGTTGATTTTCTCGAATCGCAAATTGACGAGTGCTCTAACAATGAGTGG
Protein: 895 (aa)
MTMTTTAKKNSPSSSTTDVRRSSSSSLEAGEEIEYIAKQISDHAEAIYQEWKARGLAPSEILKCHPDTDKKFNSTLSPLVSPSKPVLNFAPSELLANDANLSNSNLKQLVNTFVNEDKARIAATGGKYTNKRVENFAQSSTKAAESSQQRGSNNTTSNTKFALDESLQNYQVPDVLRDTIEKCSKLEKPKTQPKPDHLLNWPFKYRNVINNNSSGGSINNSSNPTSTKSEEKSATSPLSFPSTSDYVDNSSRKSNIMVEVSREEEKLINALKTGAVLNNEPSVVLPEVIMSSLNEYKVQAEQQLNGIASVIKENSVSIINNNNNSSGKSKMESVDSTDSSSQPQLPHKPNHTPIFVPQIKDEARIEKGVSNFTRVATTRIPHRHDLSKFDEKKFELKSIPSPVRPFLSRGSVAERVLIFEKCPEKTPIRQPTEKPKIQAKPVNKIFPPLHSTLQRHLRRSTNFTIPQFYFPNGKPPPSIATETTVQRLELVFDQFENYEIPRDKFHIVVTVCQVPLYWRVPLFMCTQLTPTGCVNGNKFLDFWRQMTSSCHDAASRFIHIISRANKSRPFIMPEDLAPLIQDVVDSHPGLAFLKEASEFHSRYVHTVIARIFYTVNRSWSGRITASELRRSNFLDVIQLLEEEEDINQIMAYFSYEHFYVIYCKFWELDRDHDLFIDQQDLARHNDHALSSRIIERIFSGCVTRGRSKNGKSENGTHAITRMSYTDFVWFLLAEEDKMQPTAIEYWFRCMDIDGDGVLSMYELEYFYEEQQHRMEQLGIETLPFEDCLCQMLDMIKPVKRNCITLSDLKRCKMTPIFFDTFFNLEKYMEHEQRDPFAQKENDELTDWDRYAATEYELLVAEESNDGNGFEDGGDDYETNVDFLESQIDECSNNEW
| Type | Start | End | Length |
| CDS |
43607 |
44192 |
586 |
| CDS |
44670 |
45397 |
728 |
| CDS |
45461 |
45546 |
86 |
| CDS |
45643 |
45876 |
234 |
| CDS |
46106 |
46533 |
428 |
| CDS |
46603 |
46910 |
308 |
| CDS |
46992 |
47150 |
159 |
| CDS |
47220 |
47293 |
74 |
| CDS |
47503 |
47584 |
82 |
| intron |
44193 |
44669 |
477 |
| intron |
45398 |
45460 |
63 |
| intron |
45547 |
45642 |
96 |
| intron |
45877 |
46105 |
229 |
| intron |
46534 |
46602 |
69 |
| intron |
46911 |
46991 |
81 |
| intron |
47151 |
47219 |
69 |
| intron |
47294 |
47502 |
209 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663466 |
hypothetical protein AaeL_AAEL013319 [Aedes aegypti] gb|EAT34438.1| conserved hypothetical protein [Aedes aegypti] |
0.0 |
| InterPro |
IPR018247 |
EF-Hand 1, calcium-binding site |
|
| InterPro |
IPR018249 |
EF-HAND 2 |
|
| InterPro |
IPR011992 |
EF-hand-like domain |
|
| Gene Ontology(MF) |
GO:0005509 |
calcium ion binding |
|
| Pfam |
PF13499.1 |
EF-hand domain pair |
1.9e-17 |
| Pfam |
PF13821.1 |
Domain of unknown function (DUF4187) |
0.054 |
| Pfam |
PF00036.27 |
EF hand |
3.2e-05 |
| Pfam |
PF13202.1 |
EF hand |
5.4e-05 |
| Pfam |
PF13405.1 |
EF-hand domain |
9e-05 |
| Pfam |
PF13833.1 |
EF-hand domain pair |
0.033 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_05862 |
| A. aegypti |
AAEL013319 |
| B. mori |
BGIBMGA003374-TA |
| H. sapiens |
ENSP00000264977 |
| H. sapiens |
ENSP00000419344 |
| M. musculus |
ENSMUSG00000043154 |
| A. mellifera |
GB15363-PA |
| D. melanogaster |
FBgn0038744 |
| H. sapiens |
ENSP00000375080 |
| P. vanderplanki |
Pv.02454 |
| N. vitripennis |
NV13412-PA |
| H. melpomene |
HMEL015289-PA |
| H. sapiens |
ENSP00000334748 |
| D. plexippus |
DPOGS213957PA |
| P. humanus |
PHUM168120-PA |
| T. castaneum |
TC013034 |
| C. quinquefasciatus |
CPIJ002038 |