MidgeBase gene description page [Pn.02693]
Outline
| Gene ID | Pn.02693 |
| Type | Protein coding gene |
| Scaffold | PnScaf2316 |
| Start | 144 |
| End | 2352 |
| Direction | - |
Sequence
Transcript: 1371 (bp)
ATGCCGACCATGCGAGTCCTCCTCCTGCTGCTCGCTATCGTCACCATCTACGTGGCCGTGCCCACTTCAGCGCAGCGAAGAACAACCACCAAAGCACCCAGAACGGTGAAGGCGAGCGCCAAATCCCGAGCAACCAACGGCACCGCTGCGACCAAGAAGAAGAGCGGCGCGACGACCGTCAAAGTCCAGGCAAAAAATAGCAAAAAGGCTACAACGGCGGCCATCAGCATTGGTGGCCAGAAGCTGAACGTCCGCGACTCCAACCGGAATATAACGACGGCCGAGGGCCGAACAACGCGCACCTTTACGACCCGCACGTGGACACCTCGCAGCACGCGCCGCAGAACCACGCGCCGCAGAACCACGCGCCAGCCGCGCAACTGCCGCGGCACCGGCTGCCAGCGCGACGAGGAGGCCGCCTTCGACGAGTTCAAGGCGAACTTCACCAAGTCGTACGCGGACAACGAGGCCGAGTGCAGGGCGCTGCACAACTTCTGCAAGACCTACCGCGCCGTCGAGCGCAACAACCGCAAGCCCAAGCGCAGCTTCCTCATGTCGATCCTCGCCAACGCCGACGAGTCGGACGAGGAGAAGGCGGCGGCGCGCGCGAGCAAGGGCGGGCTCGTCCTCGACCCGGAGGTCATGAAGAAGGTTAAGAAGGTGACCGTCGAGGAGGCGCTGAAGTCGCCCTACGGCCTCAAGCAGGCCAACGCCAAGAAGGCCAAGAAGGTGAGGCGCCAGTCGGGCAGCGAGACGAGCTATGCCGACTTGAGCGGGCCGGTGAAAGACCAAGGCGGTTGCGGCTGCTGCTGGAGCTTCTGCGTCGTCGCTTTGCTGCAGCTCCTCAACTACAATGAAAATGGCGTGAATGTGAGTCTCTCCGAGCAGAATGTCGTCGACTGCAACGATGCTGGGTCGGAGTGCAATGGAGGCAATCCAGCAACGGCCTTCGACTATGCGCAGAACAATGGCATCGCGATGCAGGCGCACTACCCTTACCGCAAGTCGCAGGCCTCCTGCAAGCGCGACAGAGTCGAGAGCGTCTTCCAGCCCTCGTCCGGGATTTGCTACGGCGTCGTCGACACCGAGGACGAGCTCGAGAGCCTGGTCGACAACTTTGGGGCGGTCCCGATCGCCATCGGCCTGTGCGACAGCCTCATGAGCTACAGCTCGGGAGTGTTCGATGACCCGGAGTGCGACGTGCAGGTGACGCACTGCGTGACGCTGGTTGGCTACGGCACGGACGAGTTCGGCGACAGCTACTGGATTATCAAGAACTCCTGGGGTCGCTACTGGGGCTACGGAGGTTATGGACGATTGAAGAGAGGCATCAACTCCTGCAGACTGACCAGCATGTTTTTCACCCCCTGC
Protein: 457 (aa)
MPTMRVLLLLLAIVTIYVAVPTSAQRRTTTKAPRTVKASAKSRATNGTAATKKKSGATTVKVQAKNSKKATTAAISIGGQKLNVRDSNRNITTAEGRTTRTFTTRTWTPRSTRRRTTRRRTTRQPRNCRGTGCQRDEEAAFDEFKANFTKSYADNEAECRALHNFCKTYRAVERNNRKPKRSFLMSILANADESDEEKAAARASKGGLVLDPEVMKKVKKVTVEEALKSPYGLKQANAKKAKKVRRQSGSETSYADLSGPVKDQGGCGCCWSFCVVALLQLLNYNENGVNVSLSEQNVVDCNDAGSECNGGNPATAFDYAQNNGIAMQAHYPYRKSQASCKRDRVESVFQPSSGICYGVVDTEDELESLVDNFGAVPIAIGLCDSLMSYSSGVFDDPECDVQVTHCVTLVGYGTDEFGDSYWIIKNSWGRYWGYGGYGRLKRGINSCRLTSMFFTPC
| Type | Start | End | Length |
| CDS |
147 |
233 |
87 |
| CDS |
360 |
422 |
63 |
| CDS |
490 |
791 |
302 |
| CDS |
1434 |
2352 |
919 |
| intron |
234 |
359 |
126 |
| intron |
423 |
489 |
67 |
| intron |
792 |
1433 |
642 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_566920 |
putative cysteine proteinase [Arabidopsis thaliana] gb|AAG52191.1|AC012329_18 putative cysteine proteinase; 15366-14136 [Arabidopsis thaliana] emb|CAB66413.1| cysteine protease-like protein [Arabidopsis thaliana] gb|AEE78530.1| putative cysteine proteinase [Arabidopsis thaliana] |
1e-37 |
| InterPro |
IPR013128 |
Peptidase C1A, papain |
|
| InterPro |
IPR025661 |
Cysteine peptidase, asparagine active site |
|
| InterPro |
IPR025660 |
Cysteine peptidase, histidine active site |
|
| InterPro |
IPR000668 |
Peptidase C1A, papain C-terminal |
|
| InterPro |
IPR000169 |
Cysteine peptidase, cysteine active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008234 |
cysteine-type peptidase activity |
|
| Pfam |
PF12685.2 |
SpoIIIAH-like protein |
0.029 |
| Pfam |
PF03051.10 |
Peptidase C1-like family |
0.046 |
| Pfam |
PF14009.1 |
Domain of unknown function (DUF4228) |
5.1 |
| Pfam |
PF08246.7 |
Cathepsin propeptide inhibitor domain (I29) |
0.00013 |
| Pfam |
PF02163.17 |
Peptidase family M50 |
0.0072 |
| Pfam |
PF00112.18 |
Papain family cysteine protease |
2.4e-51 |
| Pfam |
PF10312.4 |
Conserved mid region of cactin |
0.02 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes