MidgeBase gene description page [Pn.02628]
Outline
| Gene ID | Pn.02628 |
| Type | Protein coding gene |
| Scaffold | PnScaf2230 |
| Start | 25548 |
| End | 35563 |
| Direction | - |
Sequence
Transcript: 3033 (bp)
ATGGAGTATTCAAACTTAAGAAAAATCATTGCTGGTTTCATAATCTACGTAGTTCTCGTGTGTAGCGATGTGAATACAAACGCAGAGGAAAGTACAAAAGACAGGATTGAGAAACACAAAGCGTGGCTGAGTCAAAGAACAAAAGATAGACAATTGGTGGGATATGTCGAAACGAACGATCCGTTTCAGAAGATTAAGTATTTTAAGAAGCTGATAAAGTTTAAGAACAAGAGCGAGCATGAGAGTGAAATTTCGTTTGTGCCGCACGACGCGATGGAAAACAATGTTCTCACTGAATTGACAACGCTCGCCATCGATACAGGAAACAAGTTCGCGTACGATACTGTCAATGGCGAGTCGAACAAATTCGAGCTCGAGACCGCGCTGACTAATGTCAGCCGCGCTTTGTCTGCGCCACCAACAGCAGCAACTACAACAACAACAACATCATCGGAACACAACATAAATAATGTTATTGCGGACGTCGATAAACAGAATTTGGATAGGAATAAAAACAATGAGATTGGAAGCGAAAAGAGTAACGACTCCGACGATGTGGGAATGCGTAATGGCGCGATCGATGCGACAAGTCCGAGTTCGATCGATTCCGAGAAGATTTTAAGCACTGCTGCTGCTGCTGCTACTCAAGCCTCAAGTGATGTCGAAATCGAGCGATTCATATCGGAGCACATTAAATATAAATCGAGTGATGTTACAATTAAAAAGTCGTGGGGACGATGGAGTCATTGGTCGTCGTGCAGCAGATCGTGTGGTGAAGGAGTGTCGTCACAGTCACGAGAGTGCATCTTGAAGCACTACAAACATGGAAAGCGAATCAATGTAACAACAATAGCCCTTAACGAGTGTATCGGATTCTATAAGCGATTTCGCATTTGTAATGAAATGGACTGTCCTCAGAATGTCGACTTTCGAGCCGAGCAGTGCAGGTCCTTCGACAACCAGACGTTCCGCGGAGTGCAGTACACGTGGGTTCCCTACCTCAAGGCCGAGTCGGAGTGCGAACTCAACTGCAAGCCCATCGATCAGAAGTACTTTGCGAAGCTCAAAGACTTTGCGACCGATGGAACGCCGTGCAAGAAGTCCAGCCCCAATGGAACCAACGAGGTTTACCGAGGCGTGTGCGTGGAAGGAAAGTGCAAGGCTGTCCTTAAAAACGGCATGATTTCTGGCATAGGTTTCGTGAACAGCGGAAATGTCCGATGCGGTGCATCAATTTGTCGGCCGATCTCGGGAATGTTTCTGAAAAATCCGCTCCCCAACGGCTATGTTCACATTACAACAATCCCTGCAGCCGCCTCAAACATTACAATCACCGAACTACGGGACAGTATCAATCTTCTAGCTCTGAAATCGACGGAATCGGAATTTATCATAAACGGAAATTATACGGCTGCACCGAGCGGAACGACAAAGTACATTGCTGCCGGTGCTGAATTTAAATATCACCGAACGGATGGCAGCTCGCGAGAGAGAGACGACAGTAAAAACGGCGAAATCACCGAATGGATCACGAGCCCAGGACCTCTCTACAAGCCAATACACGTTATGGTTTTATCGCAACAAGCAAATCCTGGAATCAAATATGAATATTTATTGCCCATAAACTTTGCTTCGTCGGAAGAGAGTGGATCAGATACTGAACTTGATTATTCGGCCGAAGACAAATCTCCACTAAATAATCGACTAAGAGCTGCGAATTATCAGCCCAACACGACCACGCCGCAGAGTCGTAAAAAGAGAAAATTTACATGGCGCGTTTTGGGATTTACGGCCTGCAGCAAAACTTGTGGAGGTGGCATTCAGCAACCAGTTATTCGATGTGTTCGAGGCGAGGGAACGAAGGCCTACTCACCGAAAAGATGTGCCCACCTCCAAAAGCCAAGCGTCAACGAGAATCTCATGAAGTGTAACACGCAGCCTTGTCCGGCATTTTGGAAAATTTCAGAGTGGTCGAAGTGCAACTGTGGAGATTCGGGCGAGAAGAGCGAGAAGACACGCGACGTAAAGTGTGTGCAAGAGCTGATTTCGGGAGTCGTCATTCAAGTCAATTCGGGTGCGTGCGTCGACGATCGTCCGATAAGCGCGCTGGCATGTGAGTGCGTGAAGCCAACGAGACCCGCAAAACACGAAACCCCGAAGCCCCAACGGGTTCCCTCAAAACTGCAGTCCAACACACAAAGCGATCAAAAAATCCACATTAACAGCAGGAACAAAACCAAACCGCCGAAATCCAAGAAAATCGGCGTGTGGCTGACATCGGACTGGAGCGAGTCTTGCTCGAACGAGTGCGGAGTCGGTCAACAGTTCAGAACAATATTCTGCGACAGAACCGTGTCGGGTTCTGATAGGACTCACATGGAAAGATGCGATCTTCGTCTCACACCGAGCACTTATCGAGAGTGCACCAGCGAAGTTAAGTGTCATGGAGACTGGTTTATCGGACCGTGGAGTACGTGTCAGGGCGACTGCTTCAATGCTTCGCGGTGGAGAACGGTGGTGTGCATCAAAGACGACGGTTTCGCAGAGGAGAGCGAGTGTGACTTGAAAAGCAAGCCTGCCACATTCGAGGATTGTACAATTGCGGAAATGGAAAAGGATTGCGGACCGAAATGGCACATCTCTGACTGGACAGAATGCTCAAAGTCCTGCGGCAACGGCATCCAAAAGAGAACGGTCAAGTGCTTGGAGATCGACAAGAGCGAGCGCGTGCTGCGAGAATCGAAAAATTGCAAGTACAGCGTGCGACCCAATGCAATGCGCTACTGCAACACACAAGATTGCTCCGACACCACCCCAGCATATGACGCTCGAGTGGACCTCCTGCAAAACGATGACCCGACATGTGTCGACGAGTTCCCGAATTGTGAAGTCATTCTGCGCTCCAAACTCTGTGGTTATCACTATTATAATGAAAACTGTTACCCGCCGGTTGATTTCCAATTTCCTAAAACAACTTTTCTACACCATTTAGTGAAAAAAAACAAGAAACTCTCGTTACAACTCTCGAAATTG
Protein: 1011 (aa)
MEYSNLRKIIAGFIIYVVLVCSDVNTNAEESTKDRIEKHKAWLSQRTKDRQLVGYVETNDPFQKIKYFKKLIKFKNKSEHESEISFVPHDAMENNVLTELTTLAIDTGNKFAYDTVNGESNKFELETALTNVSRALSAPPTAATTTTTTSSEHNINNVIADVDKQNLDRNKNNEIGSEKSNDSDDVGMRNGAIDATSPSSIDSEKILSTAAAAATQASSDVEIERFISEHIKYKSSDVTIKKSWGRWSHWSSCSRSCGEGVSSQSRECILKHYKHGKRINVTTIALNECIGFYKRFRICNEMDCPQNVDFRAEQCRSFDNQTFRGVQYTWVPYLKAESECELNCKPIDQKYFAKLKDFATDGTPCKKSSPNGTNEVYRGVCVEGKCKAVLKNGMISGIGFVNSGNVRCGASICRPISGMFLKNPLPNGYVHITTIPAAASNITITELRDSINLLALKSTESEFIINGNYTAAPSGTTKYIAAGAEFKYHRTDGSSRERDDSKNGEITEWITSPGPLYKPIHVMVLSQQANPGIKYEYLLPINFASSEESGSDTELDYSAEDKSPLNNRLRAANYQPNTTTPQSRKKRKFTWRVLGFTACSKTCGGGIQQPVIRCVRGEGTKAYSPKRCAHLQKPSVNENLMKCNTQPCPAFWKISEWSKCNCGDSGEKSEKTRDVKCVQELISGVVIQVNSGACVDDRPISALACECVKPTRPAKHETPKPQRVPSKLQSNTQSDQKIHINSRNKTKPPKSKKIGVWLTSDWSESCSNECGVGQQFRTIFCDRTVSGSDRTHMERCDLRLTPSTYRECTSEVKCHGDWFIGPWSTCQGDCFNASRWRTVVCIKDDGFAEESECDLKSKPATFEDCTIAEMEKDCGPKWHISDWTECSKSCGNGIQKRTVKCLEIDKSERVLRESKNCKYSVRPNAMRYCNTQDCSDTTPAYDARVDLLQNDDPTCVDEFPNCEVILRSKLCGYHYYNENCYPPVDFQFPKTTFLHHLVKKNKKLSLQLSKL
| Type | Start | End | Length |
| CDS |
25551 |
25568 |
18 |
| CDS |
25693 |
25766 |
74 |
| CDS |
26508 |
26642 |
135 |
| CDS |
26707 |
26857 |
151 |
| CDS |
26924 |
27117 |
194 |
| CDS |
27178 |
27269 |
92 |
| CDS |
27340 |
27423 |
84 |
| CDS |
27486 |
28201 |
716 |
| CDS |
28364 |
28569 |
206 |
| CDS |
28722 |
28923 |
202 |
| CDS |
31359 |
31613 |
255 |
| CDS |
31681 |
31771 |
91 |
| CDS |
33754 |
33796 |
43 |
| CDS |
33868 |
34528 |
661 |
| CDS |
34959 |
35049 |
91 |
| CDS |
35544 |
35563 |
20 |
| intron |
25569 |
25692 |
124 |
| intron |
25767 |
26507 |
741 |
| intron |
26643 |
26706 |
64 |
| intron |
26858 |
26923 |
66 |
| intron |
27118 |
27177 |
60 |
| intron |
27270 |
27339 |
70 |
| intron |
27424 |
27485 |
62 |
| intron |
28202 |
28363 |
162 |
| intron |
28570 |
28721 |
152 |
| intron |
28924 |
31358 |
2435 |
| intron |
31614 |
31680 |
67 |
| intron |
31772 |
33753 |
1982 |
| intron |
33797 |
33867 |
71 |
| intron |
34529 |
34958 |
430 |
| intron |
35050 |
35543 |
494 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002003907 |
GI20499 [Drosophila mojavensis] gb|EDW13349.1| GI20499 [Drosophila mojavensis] |
0.0 |
| InterPro |
IPR000884 |
Thrombospondin, type 1 repeat |
|
| InterPro |
IPR013273 |
Peptidase M12B, ADAM-TS |
|
| InterPro |
IPR010294 |
ADAM-TS Spacer 1 |
|
| Gene Ontology(CC) |
GO:0031012 |
extracellular matrix |
|
| Gene Ontology(CC) |
GO:0005578 |
proteinaceous extracellular matrix |
|
| Gene Ontology(MF) |
GO:0008237 |
metallopeptidase activity |
|
| Gene Ontology(MF) |
GO:0004222 |
metalloendopeptidase activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF08686.6 |
PLAC (protease and lacunin) domain |
2.7e-05 |
| Pfam |
PF05986.9 |
ADAM-TS Spacer 1 |
3.7e-28 |
| Pfam |
PF00090.14 |
Thrombospondin type 1 domain |
1.2e-11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000350413 |
| H. melpomene |
HMEL017821-PA |
| H. sapiens |
ENSP00000261862 |
| H. sapiens |
ENSP00000347484 |
| H. sapiens |
ENSP00000358037 |
| H. melpomene |
HMEL017820-PA |
| A. mellifera |
GB19539-PA |
| T. castaneum |
TC009838 |
| D. plexippus |
DPOGS202937PA |
| S. invicta |
SI2.2.0_10881 |
| B. mori |
BGIBMGA001906-TA |
| B. mori |
BGIBMGA001913-TA |
| S. invicta |
SI2.2.0_08477 |
| M. musculus |
ENSMUSG00000015850 |
| D. plexippus |
DPOGS202925PA |
| C. quinquefasciatus |
CPIJ006618 |
| M. musculus |
ENSMUSG00000032289 |
| A. gambiae |
AGAP010003 |
| H. sapiens |
ENSP00000358034 |
| A. mellifera |
GB10049-PA |
| P. vanderplanki |
Pv.02192 |
| H. sapiens |
ENSP00000271643 |
| H. sapiens |
ENSP00000358035 |
| D. melanogaster |
FBgn0032252 |