MidgeBase gene description page [Pn.02608]
Outline
| Gene ID | Pn.02608 |
| Type | Protein coding gene |
| Scaffold | PnScaf2224 |
| Start | 116 |
| End | 3355 |
| Direction | + |
Sequence
Transcript: 3024 (bp)
ATGTTGTTCGACGAAAAGCGCTTCGCCTATCACCTAATGCTCCAGAAGTTTATCGAAGAGGGAGGACTCGAAGCCTTTTTTGAAATGTTCCGATGGACTCTAACTGCCGGATACACAATTCCAATCCACCGCGCTATCGAACATCCCAACCTGCCAGACGGCACCGGCGAAGCTCTCGACGCGTGGCTGATGCTACTTGAGAAAATGTGCAACTTGAAGTTCATCATTGAGTCGCCGCATCAGATAACGTCGAAGAATCGCAACGGAAAGTCTGATTTCGACACAAAACACTATCTTACTTACATTCACCGTCATGCATTCTTCGCGATTCAACACATCTGGGGATTCAAGCCACTCAAGTCGTATGGCCCGAGAATGACTGAGTCGATGCTCTCCATCCTTAAGCACATCATTAAAGGAGAGAAAGTTTTGCAGTCAAAGTACTATAAGAACGGCCAAGGCGTCTCAATTCTGTTGGACAATAAGCCGAGATCAATTTTACCGGGCGCACCGGAAAGTAGCGGCACGTCAGGAGGTCAATCAAGTTCGACCGTAGCAACGCCCAGCGTAAGTGACTTCAACGAAGATCATTTGCGTCAACTGGTCGACATGGGATTCTCGCGCGAGCACAGCATTTATGCTTTGCGTCGCTACAGGAGCTTGGAAAGAGCCATGGATTATCTGCTGTCAAATCCCAGAAGTCGTGCGCCAATATTATTCGATGCCATCAGCGACGATGAGCGATCGGGCGGAGGAGCTAGCAACACAAACAACACTGCTCCCGCAAGCATGGACATTGATGTTGGGGAAGAGGACGAGCACGTGATTCGGCAAATTTTAAACAGCTTGGGCGGAGACATAAGATCGTCGACACCGATAACGCCAGCGCCGAATGTCGAATTTCCGTCGAGCATTGAGATTACGCCGGGTGCCAACAAGTCAACCTCGACTGAGAGCGCAAAGGCTGGCGAGAGCTCGAAGAATAAACAGCGTGAGACTTTGAAGAAATACCTGCTCGAGCAGCCGTTGCCGAAGAAAATAATCGATGAGTTCACTGCAAATCTCTTGGAAACATGCCTAAACATTCTCGATCAACTGCCGGAAACGGTTTACAAAATCTGCGATCTGCTCATCACAGTCGCGAAGAGAAACGGCCCGATTTGGCGCGACGAAATGCTAGACACGTTATGTAAGGAGATTTTTAACTGTGTCCAAGCGCTTATTTCTATGGTTCATGACGACGAGCGCGGCGCCAAGAGCTACAAGGAGAAGAGCGAAAAGCTAGTGTCGGGCGAGGTTGCTAACAGAACTGCCGTCAGAATCCATCTGTTCACGCTGTTTTTCCAAGGACAAAATCAAGACATGAAAGTGCCGTGTGCAAAGGCTTTGAAGATGTACAACATCATCCCACGTCTCATCAAAGTGCTCACCGATTATCAAATGATTGTGACAATGATGAACAAGGCACTGCCGACACCGAAGTGGCTTGCTCCACTGGCACTGCTCCTCGATTTGTACGACAAAGTCGCGATGCTGACTCGACACAAGCAGAAGATGCACCAAATATGCACGCGCCAATGGCAGTGGTATGACATAACGTCGCTAAAATGGCTCAACTATTCGCCACAGCAGAACAAGCTGATCAACGAGGCATACAATGCCGGAGAAAGTGAGTTCCAACTGACTGTGAGCCGACATCGATACACGATTAACTTCAAGTGCATGTCGCAAATCAATGACGAGAGCTCGAATCATCGTCCAATAATTATGGCCTTGAGATCAATCGATGAGATGAATAACAAGCCTGAGGTGTTTGACGAAAAGGCAGAGGATAAGGCCGAGGAAGCACAGGCCGACACACAAACGACGTCTGCGGAAAGTCAGCCGACTGATGCTCAAACTTCATCGTCAGCGACACGCGCAATTGCAGTTCCTCTTGTCGATACCGCAACCATCACTGAGCGCCCATCGACTCCACTCATTGAAACTGTGTTAGATTCAGCAGAAAACATCAATTTGATGGATGTCGACACTCCGGCAAAGGACTACATAAAAATACTGGAGGAAATTGAACTGGAGCCGTTGAGCACCTTTGTTCCCGAAGAGATTGTTTCGTCATGCGTTCAACTGATGGCACATCAACAACTCGACCGAGATACACTGCACGCTATCATGCGCGTCTTGGTGCGATTGACGAAGGACTACGCACTGGCCGAAGTGTTTGCTCGATTTGGTGGCATCGACGTTCTGCTCAACATGAAGCAAAATTCAGGGTTCATTGGATTCACGACGCTTGCAACGCTTTTAATTCGCCACGTTATTGAGGAGCCTAAGACGCTTTCGCTTGCTATTCAAAATGTTTTGATCAACCGTACTCTCGTGACGATTCCGCCTGGACATCGTGAACTGCTGTTTTTGGTTCGACAACTCAATTCGGCCGTTTATCGCGATCCGGAGCTTTTTAAAGAAGCCGCCTTGAAAATTCTTCGCGTCGATTTTGACTCAATGAAACGATTGCAGTTGCCAGATGAAAAGCGTTTCATTATGAAATCGATTGCGCCAACGACAAACGTAAAATACAACATGGAGCACACGACTGCGATGTCGGCCGTGTCGAAATTGCTGAAAGCCTTGATTGAGCCGGATGGGCCGCCTGGCAGCGCCATCATGATTTGGATGCAATCCGATAACAGCAAAGAAGGCGCCAACAACAGCAGCAATTCGAAGAAGGAGAAGTGGACGGCAGTAAAAGATCCACAGTCGGCGTCGTCATCATCACAGCAAGCTACCGCGTCTGATGAGCAGAAAGATAAGCAAGCCACAGGTGTTAACGATAAGCCATTACTGAATAAGTCGGCAATCTTGAAGATCCTCGCTGAGTCCGTAAAAAGCTACCAAACTGTCGCCTTATACATCACAGAGCACCGAAGTGAACATGGACCGCGAATGTCCCTCGATGGCTCAGAGCTTGATCTCGGCAATTGCCTCGTCAGATGTTACGCAAGCGCAAGAGACTGTCGTCCA
Protein: 1008 (aa)
MLFDEKRFAYHLMLQKFIEEGGLEAFFEMFRWTLTAGYTIPIHRAIEHPNLPDGTGEALDAWLMLLEKMCNLKFIIESPHQITSKNRNGKSDFDTKHYLTYIHRHAFFAIQHIWGFKPLKSYGPRMTESMLSILKHIIKGEKVLQSKYYKNGQGVSILLDNKPRSILPGAPESSGTSGGQSSSTVATPSVSDFNEDHLRQLVDMGFSREHSIYALRRYRSLERAMDYLLSNPRSRAPILFDAISDDERSGGGASNTNNTAPASMDIDVGEEDEHVIRQILNSLGGDIRSSTPITPAPNVEFPSSIEITPGANKSTSTESAKAGESSKNKQRETLKKYLLEQPLPKKIIDEFTANLLETCLNILDQLPETVYKICDLLITVAKRNGPIWRDEMLDTLCKEIFNCVQALISMVHDDERGAKSYKEKSEKLVSGEVANRTAVRIHLFTLFFQGQNQDMKVPCAKALKMYNIIPRLIKVLTDYQMIVTMMNKALPTPKWLAPLALLLDLYDKVAMLTRHKQKMHQICTRQWQWYDITSLKWLNYSPQQNKLINEAYNAGESEFQLTVSRHRYTINFKCMSQINDESSNHRPIIMALRSIDEMNNKPEVFDEKAEDKAEEAQADTQTTSAESQPTDAQTSSSATRAIAVPLVDTATITERPSTPLIETVLDSAENINLMDVDTPAKDYIKILEEIELEPLSTFVPEEIVSSCVQLMAHQQLDRDTLHAIMRVLVRLTKDYALAEVFARFGGIDVLLNMKQNSGFIGFTTLATLLIRHVIEEPKTLSLAIQNVLINRTLVTIPPGHRELLFLVRQLNSAVYRDPELFKEAALKILRVDFDSMKRLQLPDEKRFIMKSIAPTTNVKYNMEHTTAMSAVSKLLKALIEPDGPPGSAIMIWMQSDNSKEGANNSSNSKKEKWTAVKDPQSASSSSQQATASDEQKDKQATGVNDKPLLNKSAILKILAESVKSYQTVALYITEHRSEHGPRMSLDGSELDLGNCLVRCYASARDCRP
| Type | Start | End | Length |
| CDS |
116 |
533 |
418 |
| CDS |
599 |
2170 |
1572 |
| CDS |
2236 |
3170 |
935 |
| CDS |
3254 |
3352 |
99 |
| intron |
534 |
598 |
65 |
| intron |
2171 |
2235 |
65 |
| intron |
3171 |
3253 |
83 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003425329 |
PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HUWE1 [Nasonia vitripennis] |
1e-175 |
| InterPro |
IPR015940 |
Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote |
|
| InterPro |
IPR000449 |
Ubiquitin-associated/translation elongation factor EF1B, N-terminal |
|
| InterPro |
IPR004170 |
WWE domain |
|
| InterPro |
IPR009060 |
UBA-like |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF09288.5 |
Fungal ubiquitin-associated domain |
0.089 |
| Pfam |
PF00627.26 |
UBA/TS-N domain |
1.8e-06 |
| Pfam |
PF02825.15 |
WWE domain |
1.6e-13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.01222 |
| Pn.03360 |
| Pn.13131 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000401253 |
| P. vanderplanki |
Pv.08798 |
| A. mellifera |
GB18736-PA |
| A. mellifera |
GB12051-PA |
| M. musculus |
ENSMUSG00000025261 |
| H. sapiens |
ENSP00000340648 |
| S. invicta |
SI2.2.0_04457 |
| T. castaneum |
TC004152 |
| P. humanus |
PHUM461390-PA |
| H. sapiens |
ENSP00000218328 |
| D. melanogaster |
FBgn0030674 |
| H. sapiens |
ENSP00000262854 |
| H. sapiens |
ENSP00000403236 |
| A. mellifera |
GB18867-PA |