MidgeBase gene description page [Pn.02584]
Outline
| Gene ID | Pn.02584 |
| Type | Protein coding gene |
| Scaffold | PnScaf2202 |
| Start | 7625 |
| End | 10063 |
| Direction | - |
Sequence
Transcript: 2019 (bp)
ATGAGAAACTTCCTGAAATGTCGCTTCAAGAAGTTTTACTTTGTGCTCGTAACAATTACGCTCATAAGCTGTTGTGTTATTTTTTATTTATCAAAGTTCACGCTCGACAAGATAATAGAGATACAAGATAGCAGCCGACATGCACGCCGAGGACGTGGAAAAATTCCACAAATTGTCGGCCATTACATGCCCGGCGTGAGCGTCAATTTGAGTAGCGATTTCTTGAACTCCAACAATTATGATCCGATTCCGGGCGAAGGCGAAAAAGGCAATCCGGTTGTTGTGCCGTCAAAGGACTTGCTCAAAATGCAGCAGCTCTTCCAAATCAACCGCTTCAACCTGCTTGCGAGCGACAGGATCTCTGTAAATAGAACCCTCCAGGATGTCAGGAATAATGTCTGCAAGACAAAAACTTACCCAACGAATCTTCCACGAACCTCAATCATCATCGTCTTTCACAACGAAGCGTGGTCCGTCCTACTTCGCACCCTCTGGTCGGTGATTAACCGGTCGCGCGCCGACTTGGTGCAGGAAATTTTGCTCATCGACGACGCCAGCACGCGCAGCTTCCTCAAGGAGCCGCTGGACGAGTATGTGGCGAAGCTTCCTATACCGACCAGAGTCTTGCGGCTGCAGACTCGCGAAGGTTTGGTGAGCGCTCGACTGCTCGGCGCCAAAAACGCCAAAGCCGAGGTCCTCACCTTCCTCGACGCTCACTGCGAGTGCAACACGGGCTGGCTGGAGCCGCTGCTGAAGCGCGTCAAGGACAACCCGAAAGTCGTCATCTGCCCGGTCATCGACATCATTTCGGACGACAACTTCAGCTACATCAAGAGCTTCGACTTCCACTGGGGCGCCTTCAACTGGGAACTGCACTTTCGCTGGTTCATGCTCGGTGACGAGGAGCTGAAGAGGCGGCAGAAGGACATCAGTGCGCCCTTCAAAACTCCGGCATTTGCGGGCGGCCTATTTTCCATCGACCGCCAGTACTTTTTCGAGATCGGCAGCTACGACGCGGACATGAGGATTTGGGGCGGCGACAACATCGAGATGAGCCTGCGCATCTGGCAATGCGGTGGTCAAATCGAAATCTCGCCGTGCTCGCACGTCGGCCATCTCTTCCGCAAAAGCTCGCCCTACACCTTCCCCGGCGGCGTCAACGAGATCCTCAACCGAAACCTCGCGCGAGTCGCCGACGTGTGGATGGACCAGTGGAAGGAGTTCTACTACAAGTTCAATCACAACGCAGACTCCATGCGAACGACGCTCAACACCACCGACAGGGTGATGCTGAGGCAGCAGCTGCAGTGCAAGCCCTTCACCTGGTACCTCCAAAATGTGTGGAAGGAGAACTTTTTTCCGGCGAAAAATCGATTTTTCGGGCGCATTCAGATGGCGAATCTGAGCAGCATTGGGCCCGAGTATCGGCGGTATTATGACATAATTCAGGAATTTAGTCGCGTCATTCACGTTCAAGAGCAGAGCATCGACGAGAGATGGAACAAATTGATTAAGTATTTCAATAAGCGAACTGAGGCGCTCAATGAGCTCTTTCGTCACAACTCCAATGACTACTTGTGTCTACAGAAACCCAAGACTAATAACGTTGTAACTCCATATGGCCAAACTTTTATTCGCAAGTGCTCGAAGCTCTACGACAGCTTGGAGGAAATGTTTGTCATCACGATCGATGGGAAGATAATGACGAACGAGAACTTGTGCTTGGACTCGTTCAAAGTTCATACGTCCGACGACTCGAATGATGACAAGAGCAGCGGTGGCGGCAACGGCGGTGGGAAGGATGACTTGTTTTATGCCAAAATGGTCACATGCTCGACCAAGAGTACTCAGTATTTCGTTTACAACACCAATACACTCCAATTAATACAAGCAAACACAGGCATGTGCTTGCAGGGAACCAACATTCCAGCTGAAAATGAAAGTTTCAAGATCCTGCTGACCGATTGCAGCGAAAACAATAAGCATCAAAAGTGGATCTTGCTACCCGTCGAATGGCAT
Protein: 673 (aa)
MRNFLKCRFKKFYFVLVTITLISCCVIFYLSKFTLDKIIEIQDSSRHARRGRGKIPQIVGHYMPGVSVNLSSDFLNSNNYDPIPGEGEKGNPVVVPSKDLLKMQQLFQINRFNLLASDRISVNRTLQDVRNNVCKTKTYPTNLPRTSIIIVFHNEAWSVLLRTLWSVINRSRADLVQEILLIDDASTRSFLKEPLDEYVAKLPIPTRVLRLQTREGLVSARLLGAKNAKAEVLTFLDAHCECNTGWLEPLLKRVKDNPKVVICPVIDIISDDNFSYIKSFDFHWGAFNWELHFRWFMLGDEELKRRQKDISAPFKTPAFAGGLFSIDRQYFFEIGSYDADMRIWGGDNIEMSLRIWQCGGQIEISPCSHVGHLFRKSSPYTFPGGVNEILNRNLARVADVWMDQWKEFYYKFNHNADSMRTTLNTTDRVMLRQQLQCKPFTWYLQNVWKENFFPAKNRFFGRIQMANLSSIGPEYRRYYDIIQEFSRVIHVQEQSIDERWNKLIKYFNKRTEALNELFRHNSNDYLCLQKPKTNNVVTPYGQTFIRKCSKLYDSLEEMFVITIDGKIMTNENLCLDSFKVHTSDDSNDDKSSGGGNGGGKDDLFYAKMVTCSTKSTQYFVYNTNTLQLIQANTGMCLQGTNIPAENESFKILLTDCSENNKHQKWILLPVEWH
| Type | Start | End | Length |
| CDS |
7628 |
7774 |
147 |
| CDS |
8033 |
9506 |
1474 |
| CDS |
9570 |
9699 |
130 |
| CDS |
9796 |
10063 |
268 |
| intron |
7775 |
8032 |
258 |
| intron |
9507 |
9569 |
63 |
| intron |
9700 |
9795 |
96 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_317241 |
AGAP008229-PA [Anopheles gambiae str. PEST] gb|EAA12407.4| AGAP008229-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR000772 |
Ricin B lectin domain |
|
| InterPro |
IPR001173 |
Glycosyl transferase, family 2 |
|
| Pfam |
PF02709.9 |
N-terminal domain of galactosyltransferase |
3.4e-08 |
| Pfam |
PF13641.1 |
Glycosyltransferase like family 2 |
1.3e-05 |
| Pfam |
PF00535.21 |
Glycosyl transferase family 2 |
7e-30 |
| Pfam |
PF03498.9 |
Cytolethal distending toxin A/C family |
0.022 |
| Pfam |
PF10111.4 |
Glycosyltransferase like family 2 |
7.9e-11 |
| Pfam |
PF08558.5 |
Telomere repeat binding factor (TRF) |
0.0079 |
| Pfam |
PF00652.17 |
Ricin-type beta-trefoil lectin domain |
2.2e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL006452 |
| A. aegypti |
AAEL013274 |
| T. castaneum |
TC005902 |
| H. sapiens |
ENSP00000438028 |
| H. sapiens |
ENSP00000440910 |
| D. melanogaster |
FBgn0031681 |
| M. musculus |
ENSMUSG00000000420 |
| A. mellifera |
GB12999-PA |
| N. vitripennis |
NV15903-PA |
| T. castaneum |
TC005702 |
| D. plexippus |
DPOGS200434PA |
| C. quinquefasciatus |
CPIJ801660 |
| B. mori |
BGIBMGA008904-TA |
| H. sapiens |
ENSP00000465341 |
| M. musculus |
ENSMUSG00000060988 |
| H. sapiens |
ENSP00000387239 |
| P. vanderplanki |
Pv.05118 |
| P. vanderplanki |
Pv.11052 |
| H. sapiens |
ENSP00000376570 |
| A. gambiae |
AGAP008229 |
| P. humanus |
PHUM268270-PA |
| P. humanus |
PHUM496390-PA |
| C. quinquefasciatus |
CPIJ007696 |
| A. aegypti |
AAEL006558 |
| A. mellifera |
GB18068-PA |
| D. melanogaster |
FBgn0027558 |
| N. vitripennis |
NV17598-PA |
| B. mori |
BGIBMGA008895-TA |
| H. sapiens |
ENSP00000269195 |
| A. mellifera |
GB16373-PA |
| H. melpomene |
HMEL002497-PA |
| D. plexippus |
DPOGS200445PA |
| A. gambiae |
AGAP008613 |