MidgeBase gene description page [Pn.02558]
Outline
| Gene ID | Pn.02558 |
| Type | Protein coding gene |
| Scaffold | PnScaf2186 |
| Start | 30673 |
| End | 31794 |
| Direction | + |
Sequence
Transcript: 1002 (bp)
ATGGCATACAAAAACGACGGTAAGCCGAGAGTCACTTTAGAAGAATGCAAAATAAAGGAAAACCCGGATGATTACGGTTTTGCGGACGATGAATTCAATCGAGAAAATTTCAAGAGGAATTTGAAAATCAATGTTGTCAAACGCTCAAACCTGGAAATTGAGTTTGACATGATCGGCATTACACCTGCGCTGGCTAATGCATTCCGAAGAATCATGTTGAGTGAGGTTCCTTCGATGGCCATCGAGAAAGTTTACATTTACAACAACACTTCGATTATTCAAGACGAAATTCTTTCTCATCGCCTTGGATTGATTCCGCTCAAAGCTGATCCGCGGCTGTTTGAGTATAAGCTCGACGAAAAAGATGACGAGGGAAATGAGTTGGACACTCTTGAGTTTAAGCTAGAAATTAAGTGCACATGGCGAAATAAGGAAGTAAAAGACGTAAGGAACTTCGATGCAATGTATAAGAATCACTGCGTCTACTCCGAGCACATCAAATGGGTTCCGCGAGGAAAGCAGGCCACTCTCTACAATGAGGCGAATATCGGTCCTTGCGACGACAAAATTCTGATTTCAAAGATGAGACCGGGTCACGAGTTGAATCTTAAGCTGCTGGCAATCAAAGGAATCGGCAAAGATCACGCGAAATTCAGCCCGGTCTCGTTGGCCTCCTACAGACTTCTGCCTGAAATTAAGCTTTCGAGAGCCATTAAGGGAAAAGATGCGCAGCTTTTGCAAAAATGCTTTTCACCCGGAGTCATTGAAATTGACGAGAATGGAGTCGCATACGTGAAGGATGCAAGATACGATAATTGTAGTCGAAATGTTTACCGCTATCCGGATTTGTCGAGGTCAATAGAGATGACAAGAGTCCGAAATCATTTCATCTTCAATGTTGAATCCTTGGGAGCGTACAAACCAGAAGATATATTCATTGAAGCAGTTAAAATCCTTAAAAAGAAATGTGAAGTTTTGCTTGAAGAATTGAATTTTGATAAG
Protein: 334 (aa)
MAYKNDGKPRVTLEECKIKENPDDYGFADDEFNRENFKRNLKINVVKRSNLEIEFDMIGITPALANAFRRIMLSEVPSMAIEKVYIYNNTSIIQDEILSHRLGLIPLKADPRLFEYKLDEKDDEGNELDTLEFKLEIKCTWRNKEVKDVRNFDAMYKNHCVYSEHIKWVPRGKQATLYNEANIGPCDDKILISKMRPGHELNLKLLAIKGIGKDHAKFSPVSLASYRLLPEIKLSRAIKGKDAQLLQKCFSPGVIEIDENGVAYVKDARYDNCSRNVYRYPDLSRSIEMTRVRNHFIFNVESLGAYKPEDIFIEAVKILKKKCEVLLEELNFDK
| Type | Start | End | Length |
| CDS |
30673 |
30997 |
325 |
| CDS |
31059 |
31324 |
266 |
| CDS |
31381 |
31791 |
411 |
| intron |
30998 |
31058 |
61 |
| intron |
31325 |
31380 |
56 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001844509 |
DNA-directed RNA polymerase I 40 kDa polypeptide [Culex quinquefasciatus] gb|EDS37299.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex quinquefasciatus] |
1e-130 |
| InterPro |
IPR011262 |
DNA-directed RNA polymerase, insert domain |
|
| InterPro |
IPR011261 |
DNA-directed RNA polymerase, dimerisation |
|
| InterPro |
IPR001514 |
DNA-directed RNA polymerase, 30-40kDa subunit, conserved site |
|
| InterPro |
IPR011263 |
DNA-directed RNA polymerase, RpoA/D/Rpb3-type |
|
| InterPro |
IPR009025 |
DNA-directed RNA polymerase, RBP11-like |
|
| Gene Ontology(BP) |
GO:0006351 |
transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0046983 |
protein dimerization activity |
|
| Pfam |
PF01193.19 |
RNA polymerase Rpb3/Rpb11 dimerisation domain |
2e-37 |
| Pfam |
PF01000.21 |
RNA polymerase Rpb3/RpoA insert domain |
8e-27 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL007568 |
| M. musculus |
ENSMUSG00000067148 |
| B. mori |
BGIBMGA004913-TA |
| A. mellifera |
GB19758-PA |
| D. melanogaster |
FBgn0031657 |
| C. quinquefasciatus |
CPIJ003123 |
| S. invicta |
SI2.2.0_03179 |
| P. vanderplanki |
Pv.12159 |
| P. humanus |
PHUM515130-PA |
| D. plexippus |
DPOGS202263PA |
| H. melpomene |
HMEL005600-PA |
| H. sapiens |
ENSP00000307212 |
| H. sapiens |
ENSP00000361419 |
| T. castaneum |
TC014519 |
| A. gambiae |
AGAP008771 |
| H. sapiens |
ENSP00000361465 |