MidgeBase gene description page [Pn.02551]
Outline
| Gene ID | Pn.02551 |
| Type | Protein coding gene |
| Scaffold | PnScaf2186 |
| Start | 12975 |
| End | 13524 |
| Direction | + |
Sequence
Transcript: 417 (bp)
ATGGATAATAACAGTGAACAGAAACCCACAAACTTTGGTATTCACAGGCCCAAAGAGAACCCACATAAAGGAGGCTCACTTAGTGAGTTCCTTCCTCAGCTCGAGAATTATTCACCAACGATACCAGATGCTGTAACTTGCTACTACATGAATTCGTCTGGACTAAATTGTGCGGATCCAAGAATAGTCCGTCTGATCTCGATTGCTGCCCAAAAGTTCATTTCCGATGTAGCCAATGACGCTTTGCAGCACTGCAAGACAAAGAGCTCCGCTAACCCCACAACAAACAAGAACCAGAAGGAAAAAGACAACAAAAACAACAAAGACAAGAATCGATTTATTCTCACGGTCGACGACTTGGCTCCTGCACTCAATGAAAACTACGGAATTAAGACCACTCAAATGAAATATCTCACC
Protein: 139 (aa)
MDNNSEQKPTNFGIHRPKENPHKGGSLSEFLPQLENYSPTIPDAVTCYYMNSSGLNCADPRIVRLISIAAQKFISDVANDALQHCKTKSSANPTTNKNQKEKDNKNNKDKNRFILTVDDLAPALNENYGIKTTQMKYLT
| Type | Start | End | Length |
| CDS |
12975 |
13101 |
127 |
| CDS |
13169 |
13226 |
58 |
| CDS |
13290 |
13521 |
232 |
| intron |
13102 |
13168 |
67 |
| intron |
13227 |
13289 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_314706 |
AGAP008612-PA [Anopheles gambiae str. PEST] gb|EAA10055.4| AGAP008612-PA [Anopheles gambiae str. PEST] |
5e-34 |
| InterPro |
IPR003923 |
Transcription initiation factor TFIID, 23-30kDa subunit |
|
| Gene Ontology(BP) |
GO:0006352 |
transcription initiation, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Pfam |
PF03540.8 |
Transcription initiation factor TFIID 23-30kDa subunit |
4.7e-26 |
| Pfam |
PF13718.1 |
GNAT acetyltransferase 2 |
0.097 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL006469-PA |
| A. gambiae |
AGAP008612 |
| D. melanogaster |
FBgn0028398 |
| M. musculus |
ENSMUSG00000071151 |
| H. sapiens |
ENSP00000299424 |
| M. musculus |
ENSMUSG00000043866 |
| A. aegypti |
AAEL005742 |
| P. vanderplanki |
Pv.10067 |
| C. quinquefasciatus |
CPIJ801787 |
| D. melanogaster |
FBgn0026324 |
| N. vitripennis |
NV18147-PA |
| P. humanus |
PHUM179220-PA |
| T. castaneum |
TC013001 |
| A. mellifera |
GB14135-PA |
| B. mori |
BGIBMGA003828-TA |
| D. plexippus |
DPOGS205227PA |
| S. invicta |
SI2.2.0_13970 |