MidgeBase gene description page [Pn.02550]
Outline
| Gene ID | Pn.02550 |
| Type | Protein coding gene |
| Scaffold | PnScaf2186 |
| Start | 10622 |
| End | 11570 |
| Direction | + |
Sequence
Transcript: 609 (bp)
ATGTCAAACAAGAAGCCGAGCTCAGGCCCCCCGTCACTTCATAAAGTGATCATGGTCGGATCTGGAGGCGTGGGTAAAAGTGCCCTCACGCTCCAGTTTATGTACGATGAGTTTGTTGAGGACTACGAACCGACTAAGGCTGACAGTTATCGAAAGAAAGTGGTACTAGACGGAGAGGAAGTTCAAATAGATATTCTCGACACTGCCGGACAAGAGGATTATGCAGCTATTCGTGACAACTACTTTCGAAGCGGCGAAGGTTTCCTTTGCGTATTCTCCATCACAGACGACGAAAGCTTCCAAGCCACTCAGGAATTCCGAGAACAAATTCTGCGCGTGAAAAATGACGAGAACATACCGTTTCTGCTTGTGGGCAATAAATGCGATTTAAATGATAAACGTAAGGTGCCATTGACGGAGTGTCAGGCGAGAGCGCAACAATGGGGCGGTGTTCCGTATGTAGAAACATCTGCGAAAACTCGCGAGAATGTCGATAAAGTTTTCTTTGACTTGATGCGTGAGATTCGATCGAGGAAAACGGAAGATTCGTCCAAAGGCAACGGACGCGCTAAGGAGAGGAAGAAGAGAAAGCTAAAGTGTACTCTGCTG
Protein: 203 (aa)
MSNKKPSSGPPSLHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDENIPFLLVGNKCDLNDKRKVPLTECQARAQQWGGVPYVETSAKTRENVDKVFFDLMREIRSRKTEDSSKGNGRAKERKKRKLKCTLL
| Type | Start | End | Length |
| CDS |
10622 |
10705 |
84 |
| CDS |
10798 |
10872 |
75 |
| CDS |
10959 |
11119 |
161 |
| CDS |
11194 |
11371 |
178 |
| CDS |
11457 |
11567 |
111 |
| intron |
10706 |
10797 |
92 |
| intron |
10873 |
10958 |
86 |
| intron |
11120 |
11193 |
74 |
| intron |
11372 |
11456 |
85 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_525063 |
Ras-related protein, isoform C [Drosophila melanogaster] ref|NP_726882.1| Ras-related protein, isoform A [Drosophila melanogaster] sp|P48555.2|RALA_DROME RecName: Full=Ras-related protein Ral-a; Flags: Precursor gb|AAC34902.1| ral [Drosophila melanogaster] gb|AAF45889.1| Ras-related protein, isoform A [Drosophila melanogaster] gb|AAF45890.1| Ras-related protein, isoform C [Drosophila melanogaster] gb|AAM50772.1| LD21679p [Drosophila melanogaster] gb|ACL84473.1| Rala-PA [synthetic construct] gb|ACL89414.1| Rala-PA [synthetic construct] |
1e-102 |
| InterPro |
IPR002041 |
Ran GTPase |
|
| InterPro |
IPR005225 |
Small GTP-binding protein domain |
|
| InterPro |
IPR001806 |
Small GTPase superfamily |
|
| InterPro |
IPR003579 |
Small GTPase superfamily, Rab type |
|
| InterPro |
IPR020849 |
Small GTPase superfamily, Ras type |
|
| InterPro |
IPR003578 |
Small GTPase superfamily, Rho type |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0006913 |
nucleocytoplasmic transport |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0007264 |
small GTPase mediated signal transduction |
|
| Gene Ontology(BP) |
GO:0006184 |
GTP catabolic process |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
1e-10 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
0.0042 |
| Pfam |
PF08477.8 |
Miro-like protein |
1.1e-17 |
| Pfam |
PF04670.7 |
Gtr1/RagA G protein conserved region |
0.014 |
| Pfam |
PF13481.1 |
AAA domain |
0.019 |
| Pfam |
PF02421.13 |
Ferrous iron transport protein B |
0.036 |
| Pfam |
PF03029.12 |
Conserved hypothetical ATP binding protein |
0.084 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
1.7e-07 |
| Pfam |
PF00735.13 |
Septin |
0.023 |
| Pfam |
PF00071.17 |
Ras family |
1.6e-55 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0015286 |
| C. quinquefasciatus |
CPIJ012257 |
| B. mori |
BGIBMGA009918-TA |
| T. castaneum |
TC012218 |
| H. sapiens |
ENSP00000005257 |
| S. invicta |
SI2.2.0_02064 |
| A. aegypti |
AAEL014749 |
| P. humanus |
PHUM256760-PA |
| A. mellifera |
GB12838-PA |
| N. vitripennis |
NV15633-PA |
| P. vanderplanki |
Pv.10068 |
| H. melpomene |
HMEL014805-PA |
| D. plexippus |
DPOGS205708PA |
| M. musculus |
ENSMUSG00000008859 |
| A. gambiae |
AGAP012108 |