MidgeBase gene description page [Pn.02544]
Outline
| Gene ID | Pn.02544 |
| Type | Protein coding gene |
| Scaffold | PnScaf2185 |
| Start | 28897 |
| End | 29764 |
| Direction | - |
Sequence
Transcript: 768 (bp)
ATGGAGGAAGCATTGAAAAAGTGGGAGGGCAAGGTGGCGATCGTGACTGGCGCGAGTCAAGGAGTTGGAGCCGCTGTGGCTGTTGCTCTCGCAAGGAGCGGCATGATTGTCTGCGCTCTGGCTAAGAGAAAAGATAAATTGGAGGCGCTCCGCGTGGGACTGATGAAGATCAAGGGACAATTGAACGCAGTCGAGTGCGACATCGCGAACGAGCAGAGCGTTCAGCAGGTCTTCTCGTGGGTGGAGAAGACGCACGGCGGCGTCGACTTGCTGGTGAACAACGCCGGCATCTTCACGAAATCCCTCTACCTCGACGAGAACAACACCAAGGAGATAAGGAACGTGATCGACAACGAGATCATGGGAAACATTTACTGCAGCCGTCAAGCGATCAAGTCGATGCAGACGCGCGACATCAACGGACACATCGTCAACATCAACTCGATCTTGGGCCACAAAATCAACCAAGCCGTGCCCGGAAACAAGCCGCTCAACTCGCTCTATCCGCCCGTGAAGCACGCCATCAAAGCCATGACCGAGTGCATCCGCCAGGAGCTGCTGTACTTGCAGACGCAAATCAAAATCACTTCCATCTCGCCCGGACTCTGCGAGGGCGACATCGTCTCATCGTGCACCGACAACGAGCTCGTGTCGCTCATGCCGAAGCTCAAGCCCGAAGACGTCGCCAACACGGTCCTCTACTGCATCAGCCTGCCCGATGGCGTTCAGATCGATGAGCTCGTCATCAAGCCCATTGGCGAGTTCGTT
Protein: 256 (aa)
MEEALKKWEGKVAIVTGASQGVGAAVAVALARSGMIVCALAKRKDKLEALRVGLMKIKGQLNAVECDIANEQSVQQVFSWVEKTHGGVDLLVNNAGIFTKSLYLDENNTKEIRNVIDNEIMGNIYCSRQAIKSMQTRDINGHIVNINSILGHKINQAVPGNKPLNSLYPPVKHAIKAMTECIRQELLYLQTQIKITSISPGLCEGDIVSSCTDNELVSLMPKLKPEDVANTVLYCISLPDGVQIDELVIKPIGEFV
| Type | Start | End | Length |
| CDS |
28900 |
29539 |
640 |
| CDS |
29637 |
29764 |
128 |
| intron |
29540 |
29636 |
97 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653943 |
oxidoreductase [Aedes aegypti] ref|XP_001653944.1| oxidoreductase [Aedes aegypti] gb|EAT38420.1| oxidoreductase [Aedes aegypti] gb|EAT38421.1| oxidoreductase [Aedes aegypti] |
3e-90 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
0.017 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
2.6e-06 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
7.8e-06 |
| Pfam |
PF02882.14 |
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain |
0.023 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
3.6e-21 |
| Pfam |
PF08659.5 |
KR domain |
4.8e-09 |
| Pfam |
PF12242.3 |
NAD(P)H binding domain of trans-2-enoyl-CoA reductase |
0.015 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.00171 |